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Magnesium in PDB 7eo3: X-Ray Structure Analysis of Beita-1,3-Glucanase

Protein crystallography data

The structure of X-Ray Structure Analysis of Beita-1,3-Glucanase, PDB code: 7eo3 was solved by Q.Wan, J.Feng, S.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.92 / 1.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.397, 61.01, 70.672, 90, 90, 90
R / Rfree (%) 14.3 / 16.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure Analysis of Beita-1,3-Glucanase (pdb code 7eo3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure Analysis of Beita-1,3-Glucanase, PDB code: 7eo3:

Magnesium binding site 1 out of 1 in 7eo3

Go back to Magnesium Binding Sites List in 7eo3
Magnesium binding site 1 out of 1 in the X-Ray Structure Analysis of Beita-1,3-Glucanase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure Analysis of Beita-1,3-Glucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:13.0
occ:1.00
O A:HOH544 2.0 21.6 1.0
OD1 A:ASP271 2.1 16.4 1.0
O A:GLY65 2.1 13.5 1.0
OD1 A:ASP15 2.1 14.9 1.0
O A:ASP15 2.2 12.3 1.0
O A:ASP271 2.2 12.6 1.0
CG A:ASP15 3.2 14.9 1.0
C A:ASP271 3.2 11.9 1.0
C A:ASP15 3.2 11.9 1.0
C A:GLY65 3.2 12.9 1.0
CG A:ASP271 3.3 15.5 1.0
CA A:ASP15 3.7 12.1 1.0
CA A:ASP271 3.7 12.0 1.0
CB A:ASP15 3.8 14.2 1.0
CA A:GLY65 3.8 13.8 1.0
CB A:ASP271 4.1 13.5 1.0
OD2 A:ASP15 4.1 16.8 1.0
O A:HOH571 4.1 35.5 1.0
OD2 A:ASP271 4.3 17.1 1.0
N A:TYR272 4.3 11.8 1.0
N A:PHE16 4.3 12.3 1.0
N A:ASN66 4.4 12.9 1.0
CB A:TYR272 4.5 12.8 1.0
CB A:PHE16 4.6 12.4 1.0
CA A:TYR272 4.7 12.4 1.0
OD1 A:ASN66 4.7 15.5 1.0
C A:PHE16 4.7 13.5 1.0
CA A:PHE16 4.8 12.5 1.0
CA A:ASN66 4.8 12.5 1.0
CA A:SER1 4.9 19.0 1.0
O A:HOH642 4.9 34.7 1.0
CG2 A:THR17 4.9 23.0 1.0
O A:PHE16 4.9 14.2 1.0

Reference:

J.Feng, S.Xu, R.Feng, A.Kovalevsky, X.Zhang, D.Liu, Q.Wan. Identification and Structural Analysis of A Thermophilic Beta-1,3-Glucanase From Compost Bioresour Bioprocess V. 8 102 2021.
ISSN: ESSN 2197-4365
DOI: 10.1186/S40643-021-00449-4
Page generated: Wed Oct 2 20:51:36 2024

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