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Magnesium in PDB 7eo9: Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx

Protein crystallography data

The structure of Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx, PDB code: 7eo9 was solved by T.Ogawa, X.Jiang, N.Hirokawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.68 / 2.57
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.502, 57.319, 154.826, 90, 90, 90
R / Rfree (%) 22.5 / 23.9

Other elements in 7eo9:

The structure of Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx (pdb code 7eo9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx, PDB code: 7eo9:

Magnesium binding site 1 out of 1 in 7eo9

Go back to Magnesium Binding Sites List in 7eo9
Magnesium binding site 1 out of 1 in the Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:67.8
occ:1.00
AL A:AF3402 1.9 60.8 1.0
F2 A:AF3402 1.9 48.2 1.0
F1 A:AF3402 1.9 54.4 1.0
CB A:SER104 2.4 37.7 1.0
O2B A:ADP401 2.6 37.5 1.0
OG A:SER104 2.7 45.8 1.0
OD2 A:ASP248 3.4 33.2 1.0
CA A:SER104 3.4 39.4 1.0
N A:SER104 3.4 38.6 1.0
PB A:ADP401 3.7 36.4 1.0
F3 A:AF3402 3.7 55.3 1.0
OD1 A:ASP248 3.8 35.4 1.0
O3A A:ADP401 4.0 37.8 1.0
CG A:ASP248 4.0 33.0 1.0
O2A A:ADP401 4.1 43.0 1.0
O A:HOH517 4.1 40.5 1.0
O3B A:ADP401 4.1 40.8 1.0
C A:LYS103 4.5 34.7 1.0
O A:HOH508 4.6 38.5 1.0
C A:SER104 4.7 36.7 1.0
PA A:ADP401 4.7 39.3 1.0
CB A:LYS103 4.7 34.1 1.0
O1B A:ADP401 4.9 39.7 1.0
NH2 A:ARG203 5.0 47.5 1.0

Reference:

M.Morikawa, T.Ogawa, N.Hirokawa. Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx To Be Published.
Page generated: Thu Mar 31 04:06:12 2022

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