Magnesium in PDB 7eqd: Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
Other elements in 7eqd:
The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
(pdb code 7eqd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 36 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum, PDB code: 7eqd:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 1 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:7.0
occ:1.00
|
MG
|
L:07D301
|
0.0
|
7.0
|
1.0
|
|
ND
|
L:07D301
|
2.0
|
7.0
|
1.0
|
|
NB
|
L:07D301
|
2.1
|
7.0
|
1.0
|
|
NC
|
L:07D301
|
2.1
|
7.0
|
1.0
|
|
NA
|
L:07D301
|
2.2
|
7.0
|
1.0
|
|
NE2
|
L:HIS174
|
2.2
|
7.2
|
1.0
|
|
CE1
|
L:HIS174
|
2.8
|
7.2
|
1.0
|
|
C4D
|
L:07D301
|
3.0
|
7.0
|
1.0
|
|
C4B
|
L:07D301
|
3.1
|
7.0
|
1.0
|
|
C1B
|
L:07D301
|
3.1
|
7.0
|
1.0
|
|
C1C
|
L:07D301
|
3.1
|
7.0
|
1.0
|
|
C4A
|
L:07D301
|
3.1
|
7.0
|
1.0
|
|
C1D
|
L:07D301
|
3.1
|
7.0
|
1.0
|
|
C4C
|
L:07D301
|
3.2
|
7.0
|
1.0
|
|
C1A
|
L:07D301
|
3.2
|
7.0
|
1.0
|
|
CHC
|
L:07D301
|
3.4
|
7.0
|
1.0
|
|
CHB
|
L:07D301
|
3.4
|
7.0
|
1.0
|
|
CD2
|
L:HIS174
|
3.4
|
7.2
|
1.0
|
|
CHA
|
L:07D301
|
3.5
|
7.0
|
1.0
|
|
CBB
|
M:07D404
|
3.5
|
6.9
|
1.0
|
|
CHD
|
L:07D301
|
3.5
|
7.0
|
1.0
|
|
CAB
|
M:07D404
|
3.7
|
6.9
|
1.0
|
|
OBB
|
M:07D404
|
3.9
|
6.9
|
1.0
|
|
ND1
|
L:HIS174
|
4.1
|
7.2
|
1.0
|
|
C3D
|
L:07D301
|
4.2
|
7.0
|
1.0
|
|
C2B
|
L:07D301
|
4.3
|
7.0
|
1.0
|
|
C2D
|
L:07D301
|
4.3
|
7.0
|
1.0
|
|
C3B
|
L:07D301
|
4.3
|
7.0
|
1.0
|
|
CG
|
L:HIS174
|
4.4
|
7.2
|
1.0
|
|
C3B
|
M:07D404
|
4.4
|
6.9
|
1.0
|
|
C2C
|
L:07D301
|
4.4
|
7.0
|
1.0
|
|
C3A
|
L:07D301
|
4.4
|
7.0
|
1.0
|
|
CD2
|
L:PHE168
|
4.4
|
7.8
|
1.0
|
|
C3C
|
L:07D301
|
4.5
|
7.0
|
1.0
|
|
C2A
|
L:07D301
|
4.5
|
7.0
|
1.0
|
|
CE2
|
L:PHE168
|
4.5
|
7.8
|
1.0
|
|
CBD
|
L:07D301
|
4.9
|
7.0
|
1.0
|
|
CD1
|
L:ILE178
|
4.9
|
7.5
|
1.0
|
|
CMA
|
L:07D301
|
5.0
|
7.0
|
1.0
|
|
Magnesium binding site 2 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 2 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg307
b:9.8
occ:1.00
|
MG
|
L:07D307
|
0.0
|
9.8
|
1.0
|
|
ND
|
L:07D307
|
2.0
|
9.8
|
1.0
|
|
NB
|
L:07D307
|
2.1
|
9.8
|
1.0
|
|
NC
|
L:07D307
|
2.1
|
9.8
|
1.0
|
|
NA
|
L:07D307
|
2.2
|
9.8
|
1.0
|
|
NE2
|
L:HIS154
|
2.2
|
8.7
|
1.0
|
|
C4D
|
L:07D307
|
3.0
|
9.8
|
1.0
|
|
C4B
|
L:07D307
|
3.1
|
9.8
|
1.0
|
|
C1B
|
L:07D307
|
3.1
|
9.8
|
1.0
|
|
CD2
|
L:HIS154
|
3.1
|
8.7
|
1.0
|
|
C1C
|
L:07D307
|
3.1
|
9.8
|
1.0
|
|
C1D
|
L:07D307
|
3.1
|
9.8
|
1.0
|
|
C4A
|
L:07D307
|
3.1
|
9.8
|
1.0
|
|
C4C
|
L:07D307
|
3.2
|
9.8
|
1.0
|
|
C1A
|
L:07D307
|
3.2
|
9.8
|
1.0
|
|
CE1
|
L:HIS154
|
3.2
|
8.7
|
1.0
|
|
CHC
|
L:07D307
|
3.4
|
9.8
|
1.0
|
|
CHB
|
L:07D307
|
3.4
|
9.8
|
1.0
|
|
CHA
|
L:07D307
|
3.4
|
9.8
|
1.0
|
|
CHD
|
L:07D307
|
3.5
|
9.8
|
1.0
|
|
C3D
|
L:07D307
|
4.2
|
9.8
|
1.0
|
|
C2D
|
L:07D307
|
4.3
|
9.8
|
1.0
|
|
CG
|
L:HIS154
|
4.3
|
8.7
|
1.0
|
|
C2B
|
L:07D307
|
4.3
|
9.8
|
1.0
|
|
ND1
|
L:HIS154
|
4.3
|
8.7
|
1.0
|
|
C3B
|
L:07D307
|
4.3
|
9.8
|
1.0
|
|
C2C
|
L:07D307
|
4.4
|
9.8
|
1.0
|
|
C3A
|
L:07D307
|
4.4
|
9.8
|
1.0
|
|
C3C
|
L:07D307
|
4.5
|
9.8
|
1.0
|
|
C2A
|
L:07D307
|
4.5
|
9.8
|
1.0
|
|
C20
|
L:08I302
|
4.6
|
11.7
|
1.0
|
|
OBB
|
L:08I302
|
4.6
|
11.7
|
1.0
|
|
CE2
|
M:TYR209
|
4.6
|
8.9
|
1.0
|
|
CBD
|
L:07D307
|
4.9
|
9.8
|
1.0
|
|
CD2
|
L:LEU155
|
4.9
|
8.8
|
1.0
|
|
Magnesium binding site 3 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 3 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg403
b:10.0
occ:1.00
|
MG
|
M:07D403
|
0.0
|
10.0
|
1.0
|
|
ND
|
M:07D403
|
2.0
|
10.0
|
1.0
|
|
NB
|
M:07D403
|
2.1
|
10.0
|
1.0
|
|
NC
|
M:07D403
|
2.1
|
10.0
|
1.0
|
|
NE2
|
M:HIS181
|
2.1
|
8.0
|
1.0
|
|
NA
|
M:07D403
|
2.2
|
10.0
|
1.0
|
|
CD2
|
M:HIS181
|
2.9
|
8.0
|
1.0
|
|
C4D
|
M:07D403
|
3.0
|
10.0
|
1.0
|
|
C4B
|
M:07D403
|
3.1
|
10.0
|
1.0
|
|
C1B
|
M:07D403
|
3.1
|
10.0
|
1.0
|
|
C1C
|
M:07D403
|
3.1
|
10.0
|
1.0
|
|
C1D
|
M:07D403
|
3.1
|
10.0
|
1.0
|
|
C4A
|
M:07D403
|
3.1
|
10.0
|
1.0
|
|
C4C
|
M:07D403
|
3.2
|
10.0
|
1.0
|
|
C1A
|
M:07D403
|
3.2
|
10.0
|
1.0
|
|
CE1
|
M:HIS181
|
3.2
|
8.0
|
1.0
|
|
CHB
|
M:07D403
|
3.4
|
10.0
|
1.0
|
|
CHC
|
M:07D403
|
3.4
|
10.0
|
1.0
|
|
CHA
|
M:07D403
|
3.5
|
10.0
|
1.0
|
|
CHD
|
M:07D403
|
3.5
|
10.0
|
1.0
|
|
CG
|
M:HIS181
|
4.1
|
8.0
|
1.0
|
|
C3D
|
M:07D403
|
4.2
|
10.0
|
1.0
|
|
ND1
|
M:HIS181
|
4.2
|
8.0
|
1.0
|
|
C2B
|
M:07D403
|
4.3
|
10.0
|
1.0
|
|
C2D
|
M:07D403
|
4.3
|
10.0
|
1.0
|
|
C3B
|
M:07D403
|
4.3
|
10.0
|
1.0
|
|
C2C
|
M:07D403
|
4.4
|
10.0
|
1.0
|
|
C3C
|
M:07D403
|
4.4
|
10.0
|
1.0
|
|
C3A
|
M:07D403
|
4.4
|
10.0
|
1.0
|
|
C2A
|
M:07D403
|
4.5
|
10.0
|
1.0
|
|
OBB
|
M:08I405
|
4.5
|
13.9
|
1.0
|
|
C18
|
M:CRT407
|
4.8
|
11.9
|
1.0
|
|
CBD
|
M:07D403
|
4.9
|
10.0
|
1.0
|
|
CBA
|
M:07D403
|
5.0
|
10.0
|
1.0
|
|
Magnesium binding site 4 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 4 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg404
b:6.9
occ:1.00
|
MG
|
M:07D404
|
0.0
|
6.9
|
1.0
|
|
ND
|
M:07D404
|
2.0
|
6.9
|
1.0
|
|
NB
|
M:07D404
|
2.1
|
6.9
|
1.0
|
|
NC
|
M:07D404
|
2.1
|
6.9
|
1.0
|
|
NA
|
M:07D404
|
2.2
|
6.9
|
1.0
|
|
NE2
|
M:HIS201
|
2.2
|
7.2
|
1.0
|
|
C4D
|
M:07D404
|
3.0
|
6.9
|
1.0
|
|
CE1
|
M:HIS201
|
3.0
|
7.2
|
1.0
|
|
C4B
|
M:07D404
|
3.1
|
6.9
|
1.0
|
|
C1B
|
M:07D404
|
3.1
|
6.9
|
1.0
|
|
C1C
|
M:07D404
|
3.1
|
6.9
|
1.0
|
|
C4A
|
M:07D404
|
3.1
|
6.9
|
1.0
|
|
C1D
|
M:07D404
|
3.1
|
6.9
|
1.0
|
|
C4C
|
M:07D404
|
3.2
|
6.9
|
1.0
|
|
C1A
|
M:07D404
|
3.2
|
6.9
|
1.0
|
|
CD2
|
M:HIS201
|
3.3
|
7.2
|
1.0
|
|
CHC
|
M:07D404
|
3.4
|
6.9
|
1.0
|
|
CHB
|
M:07D404
|
3.4
|
6.9
|
1.0
|
|
CHA
|
M:07D404
|
3.4
|
6.9
|
1.0
|
|
CHD
|
M:07D404
|
3.5
|
6.9
|
1.0
|
|
CBB
|
L:07D301
|
3.5
|
7.0
|
1.0
|
|
CAB
|
L:07D301
|
3.8
|
7.0
|
1.0
|
|
OBB
|
L:07D301
|
4.1
|
7.0
|
1.0
|
|
ND1
|
M:HIS201
|
4.2
|
7.2
|
1.0
|
|
C3D
|
M:07D404
|
4.2
|
6.9
|
1.0
|
|
C2B
|
M:07D404
|
4.3
|
6.9
|
1.0
|
|
C2D
|
M:07D404
|
4.3
|
6.9
|
1.0
|
|
C3B
|
M:07D404
|
4.3
|
6.9
|
1.0
|
|
CG
|
M:HIS201
|
4.3
|
7.2
|
1.0
|
|
C2C
|
M:07D404
|
4.4
|
6.9
|
1.0
|
|
C3A
|
M:07D404
|
4.4
|
6.9
|
1.0
|
|
C3C
|
M:07D404
|
4.4
|
6.9
|
1.0
|
|
C2A
|
M:07D404
|
4.5
|
6.9
|
1.0
|
|
C3B
|
L:07D301
|
4.5
|
7.0
|
1.0
|
|
CD2
|
M:PHE195
|
4.6
|
6.9
|
1.0
|
|
CD1
|
M:ILE205
|
4.8
|
7.3
|
1.0
|
|
CE2
|
M:PHE195
|
4.8
|
6.9
|
1.0
|
|
CBD
|
M:07D404
|
4.9
|
6.9
|
1.0
|
|
Magnesium binding site 5 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 5 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:18.3
occ:1.00
|
MG
|
A:07D101
|
0.0
|
18.3
|
1.0
|
|
ND
|
A:07D101
|
2.0
|
18.3
|
1.0
|
|
NB
|
A:07D101
|
2.1
|
18.3
|
1.0
|
|
NC
|
A:07D101
|
2.1
|
18.3
|
1.0
|
|
NA
|
A:07D101
|
2.2
|
18.3
|
1.0
|
|
NE2
|
A:HIS29
|
2.2
|
14.7
|
1.0
|
|
C4D
|
A:07D101
|
3.0
|
18.3
|
1.0
|
|
C1B
|
A:07D101
|
3.1
|
18.3
|
1.0
|
|
C4B
|
A:07D101
|
3.1
|
18.3
|
1.0
|
|
C1C
|
A:07D101
|
3.1
|
18.3
|
1.0
|
|
C4A
|
A:07D101
|
3.1
|
18.3
|
1.0
|
|
C1D
|
A:07D101
|
3.1
|
18.3
|
1.0
|
|
CE1
|
A:HIS29
|
3.1
|
14.7
|
1.0
|
|
C4C
|
A:07D101
|
3.2
|
18.3
|
1.0
|
|
C1A
|
A:07D101
|
3.2
|
18.3
|
1.0
|
|
CD2
|
A:HIS29
|
3.3
|
14.7
|
1.0
|
|
CHC
|
A:07D101
|
3.4
|
18.3
|
1.0
|
|
CHB
|
A:07D101
|
3.4
|
18.3
|
1.0
|
|
CHA
|
A:07D101
|
3.4
|
18.3
|
1.0
|
|
CHD
|
A:07D101
|
3.5
|
18.3
|
1.0
|
|
C3D
|
A:07D101
|
4.2
|
18.3
|
1.0
|
|
CBB
|
0:07D102
|
4.2
|
17.6
|
1.0
|
|
C2B
|
A:07D101
|
4.2
|
18.3
|
1.0
|
|
C3B
|
A:07D101
|
4.3
|
18.3
|
1.0
|
|
ND1
|
A:HIS29
|
4.3
|
14.7
|
1.0
|
|
C2D
|
A:07D101
|
4.3
|
18.3
|
1.0
|
|
CG
|
A:HIS29
|
4.4
|
14.7
|
1.0
|
|
C2C
|
A:07D101
|
4.4
|
18.3
|
1.0
|
|
CMD
|
B:07D101
|
4.4
|
17.1
|
1.0
|
|
C3C
|
A:07D101
|
4.4
|
18.3
|
1.0
|
|
C3A
|
A:07D101
|
4.5
|
18.3
|
1.0
|
|
C2A
|
A:07D101
|
4.5
|
18.3
|
1.0
|
|
C14
|
0:07D102
|
4.6
|
17.6
|
1.0
|
|
CBD
|
A:07D101
|
4.9
|
18.3
|
1.0
|
|
Magnesium binding site 6 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 6 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:17.1
occ:1.00
|
MG
|
B:07D101
|
0.0
|
17.1
|
1.0
|
|
ND
|
B:07D101
|
2.0
|
17.1
|
1.0
|
|
NB
|
B:07D101
|
2.1
|
17.1
|
1.0
|
|
NC
|
B:07D101
|
2.1
|
17.1
|
1.0
|
|
NA
|
B:07D101
|
2.2
|
17.1
|
1.0
|
|
NE2
|
B:HIS39
|
2.2
|
18.1
|
1.0
|
|
CD2
|
B:HIS39
|
2.9
|
18.1
|
1.0
|
|
C4D
|
B:07D101
|
3.0
|
17.1
|
1.0
|
|
C4B
|
B:07D101
|
3.1
|
17.1
|
1.0
|
|
C1B
|
B:07D101
|
3.1
|
17.1
|
1.0
|
|
C1C
|
B:07D101
|
3.1
|
17.1
|
1.0
|
|
C4A
|
B:07D101
|
3.1
|
17.1
|
1.0
|
|
C1D
|
B:07D101
|
3.1
|
17.1
|
1.0
|
|
C4C
|
B:07D101
|
3.2
|
17.1
|
1.0
|
|
C1A
|
B:07D101
|
3.2
|
17.1
|
1.0
|
|
CE1
|
B:HIS39
|
3.3
|
18.1
|
1.0
|
|
CHC
|
B:07D101
|
3.4
|
17.1
|
1.0
|
|
CHB
|
B:07D101
|
3.4
|
17.1
|
1.0
|
|
CHA
|
B:07D101
|
3.5
|
17.1
|
1.0
|
|
CHD
|
B:07D101
|
3.5
|
17.1
|
1.0
|
|
CBB
|
D:07D101
|
4.1
|
17.7
|
1.0
|
|
CG
|
B:HIS39
|
4.2
|
18.1
|
1.0
|
|
C3D
|
B:07D101
|
4.2
|
17.1
|
1.0
|
|
C2B
|
B:07D101
|
4.3
|
17.1
|
1.0
|
|
C3B
|
B:07D101
|
4.3
|
17.1
|
1.0
|
|
ND1
|
B:HIS39
|
4.3
|
18.1
|
1.0
|
|
C2D
|
B:07D101
|
4.3
|
17.1
|
1.0
|
|
CMB
|
D:07D101
|
4.4
|
17.7
|
1.0
|
|
C2A
|
B:07D101
|
4.4
|
17.1
|
1.0
|
|
C2C
|
B:07D101
|
4.4
|
17.1
|
1.0
|
|
C3A
|
B:07D101
|
4.4
|
17.1
|
1.0
|
|
C3C
|
B:07D101
|
4.5
|
17.1
|
1.0
|
|
CAB
|
D:07D101
|
4.8
|
17.7
|
1.0
|
|
C2B
|
D:07D101
|
4.9
|
17.7
|
1.0
|
|
CD1
|
A:ILE28
|
4.9
|
14.8
|
1.0
|
|
CBD
|
B:07D101
|
4.9
|
17.1
|
1.0
|
|
Magnesium binding site 7 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 7 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:17.7
occ:1.00
|
MG
|
D:07D101
|
0.0
|
17.7
|
1.0
|
|
ND
|
D:07D101
|
2.0
|
17.7
|
1.0
|
|
NB
|
D:07D101
|
2.1
|
17.7
|
1.0
|
|
NC
|
D:07D101
|
2.1
|
17.7
|
1.0
|
|
NA
|
D:07D101
|
2.2
|
17.7
|
1.0
|
|
NE2
|
D:HIS29
|
2.4
|
15.0
|
1.0
|
|
C4D
|
D:07D101
|
3.0
|
17.7
|
1.0
|
|
C4B
|
D:07D101
|
3.1
|
17.7
|
1.0
|
|
C1B
|
D:07D101
|
3.1
|
17.7
|
1.0
|
|
C1C
|
D:07D101
|
3.1
|
17.7
|
1.0
|
|
C4A
|
D:07D101
|
3.1
|
17.7
|
1.0
|
|
C1D
|
D:07D101
|
3.1
|
17.7
|
1.0
|
|
C4C
|
D:07D101
|
3.2
|
17.7
|
1.0
|
|
C1A
|
D:07D101
|
3.2
|
17.7
|
1.0
|
|
CD2
|
D:HIS29
|
3.3
|
15.0
|
1.0
|
|
CHC
|
D:07D101
|
3.4
|
17.7
|
1.0
|
|
CHB
|
D:07D101
|
3.4
|
17.7
|
1.0
|
|
CE1
|
D:HIS29
|
3.4
|
15.0
|
1.0
|
|
CHA
|
D:07D101
|
3.4
|
17.7
|
1.0
|
|
CHD
|
D:07D101
|
3.5
|
17.7
|
1.0
|
|
C14
|
B:07D101
|
3.8
|
17.1
|
1.0
|
|
CBB
|
B:07D101
|
4.2
|
17.1
|
1.0
|
|
C3D
|
D:07D101
|
4.2
|
17.7
|
1.0
|
|
C2B
|
D:07D101
|
4.3
|
17.7
|
1.0
|
|
C3B
|
D:07D101
|
4.3
|
17.7
|
1.0
|
|
C2D
|
D:07D101
|
4.3
|
17.7
|
1.0
|
|
CMD
|
E:07D102
|
4.4
|
17.7
|
1.0
|
|
C2C
|
D:07D101
|
4.4
|
17.7
|
1.0
|
|
C3C
|
D:07D101
|
4.4
|
17.7
|
1.0
|
|
C3A
|
D:07D101
|
4.5
|
17.7
|
1.0
|
|
C2A
|
D:07D101
|
4.5
|
17.7
|
1.0
|
|
CG
|
D:HIS29
|
4.5
|
15.0
|
1.0
|
|
ND1
|
D:HIS29
|
4.5
|
15.0
|
1.0
|
|
CMB
|
B:07D101
|
4.8
|
17.1
|
1.0
|
|
CBD
|
D:07D101
|
4.9
|
17.7
|
1.0
|
|
C13
|
B:07D101
|
5.0
|
17.1
|
1.0
|
|
Magnesium binding site 8 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 8 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:17.7
occ:1.00
|
MG
|
E:07D102
|
0.0
|
17.7
|
1.0
|
|
ND
|
E:07D102
|
2.0
|
17.7
|
1.0
|
|
NB
|
E:07D102
|
2.1
|
17.7
|
1.0
|
|
NC
|
E:07D102
|
2.1
|
17.7
|
1.0
|
|
NA
|
E:07D102
|
2.2
|
17.7
|
1.0
|
|
NE2
|
E:HIS39
|
2.2
|
18.3
|
1.0
|
|
CD2
|
E:HIS39
|
2.9
|
18.3
|
1.0
|
|
C4D
|
E:07D102
|
3.0
|
17.7
|
1.0
|
|
C4B
|
E:07D102
|
3.1
|
17.7
|
1.0
|
|
C1B
|
E:07D102
|
3.1
|
17.7
|
1.0
|
|
C1C
|
E:07D102
|
3.1
|
17.7
|
1.0
|
|
C4A
|
E:07D102
|
3.1
|
17.7
|
1.0
|
|
C1D
|
E:07D102
|
3.1
|
17.7
|
1.0
|
|
C4C
|
E:07D102
|
3.2
|
17.7
|
1.0
|
|
C1A
|
E:07D102
|
3.2
|
17.7
|
1.0
|
|
CE1
|
E:HIS39
|
3.3
|
18.3
|
1.0
|
|
CHC
|
E:07D102
|
3.4
|
17.7
|
1.0
|
|
CHB
|
E:07D102
|
3.4
|
17.7
|
1.0
|
|
CHA
|
E:07D102
|
3.4
|
17.7
|
1.0
|
|
CHD
|
E:07D102
|
3.5
|
17.7
|
1.0
|
|
CBB
|
F:07D101
|
4.2
|
18.4
|
1.0
|
|
CG
|
E:HIS39
|
4.2
|
18.3
|
1.0
|
|
CMB
|
F:07D101
|
4.2
|
18.4
|
1.0
|
|
C3D
|
E:07D102
|
4.2
|
17.7
|
1.0
|
|
C2B
|
E:07D102
|
4.3
|
17.7
|
1.0
|
|
C3B
|
E:07D102
|
4.3
|
17.7
|
1.0
|
|
ND1
|
E:HIS39
|
4.3
|
18.3
|
1.0
|
|
C2D
|
E:07D102
|
4.3
|
17.7
|
1.0
|
|
C2C
|
E:07D102
|
4.4
|
17.7
|
1.0
|
|
C3A
|
E:07D102
|
4.4
|
17.7
|
1.0
|
|
C3C
|
E:07D102
|
4.5
|
17.7
|
1.0
|
|
C2A
|
E:07D102
|
4.5
|
17.7
|
1.0
|
|
CAB
|
F:07D101
|
4.8
|
18.4
|
1.0
|
|
C2B
|
F:07D101
|
4.8
|
18.4
|
1.0
|
|
CBD
|
E:07D102
|
4.9
|
17.7
|
1.0
|
|
C3B
|
F:07D101
|
5.0
|
18.4
|
1.0
|
|
Magnesium binding site 9 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 9 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:18.4
occ:1.00
|
MG
|
F:07D101
|
0.0
|
18.4
|
1.0
|
|
ND
|
F:07D101
|
2.0
|
18.4
|
1.0
|
|
NB
|
F:07D101
|
2.1
|
18.4
|
1.0
|
|
NC
|
F:07D101
|
2.1
|
18.4
|
1.0
|
|
NA
|
F:07D101
|
2.2
|
18.4
|
1.0
|
|
NE2
|
F:HIS29
|
2.4
|
15.1
|
1.0
|
|
C4D
|
F:07D101
|
3.0
|
18.4
|
1.0
|
|
C4B
|
F:07D101
|
3.1
|
18.4
|
1.0
|
|
C1B
|
F:07D101
|
3.1
|
18.4
|
1.0
|
|
C1C
|
F:07D101
|
3.1
|
18.4
|
1.0
|
|
C1D
|
F:07D101
|
3.1
|
18.4
|
1.0
|
|
C4A
|
F:07D101
|
3.1
|
18.4
|
1.0
|
|
C4C
|
F:07D101
|
3.2
|
18.4
|
1.0
|
|
C1A
|
F:07D101
|
3.2
|
18.4
|
1.0
|
|
CD2
|
F:HIS29
|
3.3
|
15.1
|
1.0
|
|
CHC
|
F:07D101
|
3.4
|
18.4
|
1.0
|
|
CHB
|
F:07D101
|
3.4
|
18.4
|
1.0
|
|
CE1
|
F:HIS29
|
3.4
|
15.1
|
1.0
|
|
CHA
|
F:07D101
|
3.4
|
18.4
|
1.0
|
|
CHD
|
F:07D101
|
3.5
|
18.4
|
1.0
|
|
C3D
|
F:07D101
|
4.2
|
18.4
|
1.0
|
|
C2B
|
F:07D101
|
4.3
|
18.4
|
1.0
|
|
C2D
|
F:07D101
|
4.3
|
18.4
|
1.0
|
|
C14
|
E:07D102
|
4.3
|
17.7
|
1.0
|
|
C3B
|
F:07D101
|
4.3
|
18.4
|
1.0
|
|
C2C
|
F:07D101
|
4.4
|
18.4
|
1.0
|
|
CG
|
F:HIS29
|
4.4
|
15.1
|
1.0
|
|
CBB
|
E:07D102
|
4.5
|
17.7
|
1.0
|
|
C3C
|
F:07D101
|
4.5
|
18.4
|
1.0
|
|
C3A
|
F:07D101
|
4.5
|
18.4
|
1.0
|
|
ND1
|
F:HIS29
|
4.5
|
15.1
|
1.0
|
|
C2A
|
F:07D101
|
4.5
|
18.4
|
1.0
|
|
CMD
|
G:07D102
|
4.5
|
17.5
|
1.0
|
|
CMB
|
E:07D102
|
4.8
|
17.7
|
1.0
|
|
CBD
|
F:07D101
|
4.9
|
18.4
|
1.0
|
|
Magnesium binding site 10 out
of 36 in 7eqd
Go back to
Magnesium Binding Sites List in 7eqd
Magnesium binding site 10 out
of 36 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum
 Mono view
 Stereo pair view
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A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodospirillum Rubrum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg102
b:17.5
occ:1.00
|
MG
|
G:07D102
|
0.0
|
17.5
|
1.0
|
|
ND
|
G:07D102
|
2.0
|
17.5
|
1.0
|
|
NB
|
G:07D102
|
2.1
|
17.5
|
1.0
|
|
NC
|
G:07D102
|
2.1
|
17.5
|
1.0
|
|
NA
|
G:07D102
|
2.2
|
17.5
|
1.0
|
|
NE2
|
G:HIS39
|
2.2
|
17.7
|
1.0
|
|
C4D
|
G:07D102
|
3.0
|
17.5
|
1.0
|
|
CD2
|
G:HIS39
|
3.0
|
17.7
|
1.0
|
|
C4B
|
G:07D102
|
3.1
|
17.5
|
1.0
|
|
C1B
|
G:07D102
|
3.1
|
17.5
|
1.0
|
|
C1C
|
G:07D102
|
3.1
|
17.5
|
1.0
|
|
C4A
|
G:07D102
|
3.1
|
17.5
|
1.0
|
|
C1D
|
G:07D102
|
3.1
|
17.5
|
1.0
|
|
C4C
|
G:07D102
|
3.2
|
17.5
|
1.0
|
|
C1A
|
G:07D102
|
3.2
|
17.5
|
1.0
|
|
CE1
|
G:HIS39
|
3.3
|
17.7
|
1.0
|
|
CHC
|
G:07D102
|
3.4
|
17.5
|
1.0
|
|
CHB
|
G:07D102
|
3.4
|
17.5
|
1.0
|
|
CHA
|
G:07D102
|
3.4
|
17.5
|
1.0
|
|
CHD
|
G:07D102
|
3.5
|
17.5
|
1.0
|
|
C3D
|
G:07D102
|
4.2
|
17.5
|
1.0
|
|
CG
|
G:HIS39
|
4.2
|
17.7
|
1.0
|
|
C2B
|
G:07D102
|
4.2
|
17.5
|
1.0
|
|
C3B
|
G:07D102
|
4.3
|
17.5
|
1.0
|
|
CMB
|
I:07D101
|
4.3
|
18.8
|
1.0
|
|
ND1
|
G:HIS39
|
4.3
|
17.7
|
1.0
|
|
C2D
|
G:07D102
|
4.3
|
17.5
|
1.0
|
|
C2C
|
G:07D102
|
4.4
|
17.5
|
1.0
|
|
C3A
|
G:07D102
|
4.4
|
17.5
|
1.0
|
|
C3C
|
G:07D102
|
4.5
|
17.5
|
1.0
|
|
C2A
|
G:07D102
|
4.5
|
17.5
|
1.0
|
|
CBB
|
I:07D101
|
4.5
|
18.8
|
1.0
|
|
C2B
|
I:07D101
|
4.8
|
18.8
|
1.0
|
|
CAB
|
I:07D101
|
4.9
|
18.8
|
1.0
|
|
C11
|
G:LMT103
|
4.9
|
27.9
|
1.0
|
|
CBD
|
G:07D102
|
4.9
|
17.5
|
1.0
|
|
CD1
|
F:ILE28
|
5.0
|
14.7
|
1.0
|
|
Reference:
K.Tani,
R.Kanno,
X.C.Ji,
M.Hall,
L.J.Yu,
Y.Kimura,
M.T.Madigan,
A.Mizoguchi,
B.M.Humbel,
Z.Y.Wang-Otomo.
Cryo-Em Structure of the Photosynthetic LH1-Rc Complex From Rhodospirillum Rubrum . Biochemistry 2021.
ISSN: ISSN 0006-2960
PubMed: 34323477
DOI: 10.1021/ACS.BIOCHEM.1C00360
Page generated: Sat Aug 21 16:24:47 2021
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