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Magnesium in PDB 7esa: The Complex Structure of Flavin Transferase Fmnb Complexed with Fad

Enzymatic activity of The Complex Structure of Flavin Transferase Fmnb Complexed with Fad

All present enzymatic activity of The Complex Structure of Flavin Transferase Fmnb Complexed with Fad:
2.7.1.180;

Protein crystallography data

The structure of The Complex Structure of Flavin Transferase Fmnb Complexed with Fad, PDB code: 7esa was solved by Y.H.Zheng, W.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.28 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.089, 67.294, 86.794, 90, 90, 90
R / Rfree (%) 19.4 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Complex Structure of Flavin Transferase Fmnb Complexed with Fad (pdb code 7esa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Complex Structure of Flavin Transferase Fmnb Complexed with Fad, PDB code: 7esa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7esa

Go back to Magnesium Binding Sites List in 7esa
Magnesium binding site 1 out of 2 in the The Complex Structure of Flavin Transferase Fmnb Complexed with Fad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Complex Structure of Flavin Transferase Fmnb Complexed with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:29.6
occ:1.00
O1P A:FAD401 2.0 38.1 1.0
O2A A:FAD401 2.2 28.6 1.0
O A:HOH586 2.3 38.2 1.0
OD1 A:ASP301 2.4 18.3 1.0
O A:HOH516 2.5 20.6 1.0
CG A:ASP301 3.2 21.6 1.0
OD2 A:ASP301 3.3 22.1 1.0
MG A:MG403 3.3 23.6 1.0
OD1 A:ASN216 3.4 34.4 1.0
P A:FAD401 3.4 29.4 1.0
PA A:FAD401 3.5 25.8 1.0
O A:HOH523 3.6 43.0 1.0
O3P A:FAD401 3.7 23.8 1.0
O A:HOH505 3.8 41.7 1.0
O A:ALA187 4.1 18.2 1.0
O5B A:FAD401 4.2 30.2 1.0
O5' A:FAD401 4.2 29.3 1.0
CG A:ASN216 4.3 31.5 1.0
O A:GLY186 4.3 21.1 1.0
CG1 A:VAL255 4.3 30.9 1.0
ND2 A:ASN216 4.4 27.6 1.0
O2P A:FAD401 4.5 32.9 1.0
CB A:LYS190 4.5 21.9 1.0
C A:ALA187 4.5 17.2 1.0
CB A:ASP301 4.6 24.6 1.0
O1A A:FAD401 4.6 26.8 1.0
CA A:ALA187 4.7 18.3 1.0
CG A:LYS190 4.8 27.1 1.0
CD A:LYS190 4.9 31.6 1.0

Magnesium binding site 2 out of 2 in 7esa

Go back to Magnesium Binding Sites List in 7esa
Magnesium binding site 2 out of 2 in the The Complex Structure of Flavin Transferase Fmnb Complexed with Fad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Complex Structure of Flavin Transferase Fmnb Complexed with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:23.6
occ:1.00
OD1 A:ASP301 2.3 18.3 1.0
O A:ASP301 2.4 26.7 1.0
O2A A:FAD401 2.4 28.6 1.0
O A:ALA187 2.5 18.2 1.0
O A:HOH523 2.5 43.0 1.0
OG A:SER304 2.6 33.2 1.0
CG A:ASP301 3.2 21.6 1.0
C A:ASP301 3.2 24.5 1.0
MG A:MG402 3.3 29.6 1.0
CA A:ASP301 3.5 23.1 1.0
C A:ALA187 3.5 17.2 1.0
PA A:FAD401 3.6 25.8 1.0
CB A:SER304 3.6 34.1 1.0
CB A:ASP301 3.9 24.6 1.0
O1A A:FAD401 3.9 26.8 1.0
CA A:ALA187 4.0 18.3 1.0
O A:HOH543 4.0 30.4 1.0
OD2 A:ASP301 4.0 22.1 1.0
O A:HOH586 4.0 38.2 1.0
CB A:ALA187 4.2 27.7 1.0
O A:HOH520 4.3 32.8 1.0
OG A:SER257 4.4 35.6 1.0
O5B A:FAD401 4.4 30.2 1.0
N A:GLY302 4.5 21.1 1.0
O A:HOH516 4.5 20.6 1.0
CG1 A:VAL255 4.7 30.9 1.0
N A:ILE188 4.7 15.4 1.0
O A:GLY300 4.8 27.8 1.0
CA A:SER304 4.8 30.6 1.0
N A:ASP301 4.8 20.1 1.0
N A:SER304 4.8 30.9 1.0
O3P A:FAD401 4.9 23.8 1.0
O1P A:FAD401 4.9 38.1 1.0
CA A:GLY302 5.0 24.1 1.0

Reference:

Y.H.Zheng, W.Cheng. The Complex Structure of Flavin Transferase Fmnb Complexed with Fad at 1.8 Angstroms Resolution To Be Published.
Page generated: Wed Oct 2 20:56:57 2024

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