Magnesium in PDB 7ew6: Barley Photosystem I-Lhci-LHCA5 Supercomplex

All present enzymatic activity of Barley Photosystem I-Lhci-LHCA5 Supercomplex:
1.97.1.12;

The structure of Barley Photosystem I-Lhci-LHCA5 Supercomplex also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 149;

Binding sites:

The binding sites of Magnesium atom in the Barley Photosystem I-Lhci-LHCA5 Supercomplex (pdb code 7ew6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 149 binding sites of Magnesium where determined in the Barley Photosystem I-Lhci-LHCA5 Supercomplex, PDB code: 7ew6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:107.4 occ:1.00 MG A:CL0801 0.0 107.4 1.0 ND A:CL0801 2.0 107.4 1.0 NB A:CL0801 2.0 107.4 1.0 NC A:CL0801 2.1 107.4 1.0 NA A:CL0801 2.2 107.4 1.0 C4D A:CL0801 3.0 107.4 1.0 C4B A:CL0801 3.0 107.4 1.0 C1B A:CL0801 3.0 107.4 1.0 C1C A:CL0801 3.1 107.4 1.0 C1D A:CL0801 3.1 107.4 1.0 C4A A:CL0801 3.1 107.4 1.0 C4C A:CL0801 3.2 107.4 1.0 C1A A:CL0801 3.2 107.4 1.0 CHC A:CL0801 3.3 107.4 1.0 CHB A:CL0801 3.4 107.4 1.0 CHD A:CL0801 3.5 107.4 1.0 CHA A:CL0801 3.5 107.4 1.0 CAB B:CLA803 3.5 66.9 1.0 NE2 A:HIS675 3.8 67.2 1.0 C3B B:CLA803 4.0 66.9 1.0 CD2 A:HIS675 4.2 67.2 1.0 C3D A:CL0801 4.2 107.4 1.0 C3B A:CL0801 4.2 107.4 1.0 C2B A:CL0801 4.3 107.4 1.0 C4B B:CLA803 4.4 66.9 1.0 C2D A:CL0801 4.4 107.4 1.0 C2C A:CL0801 4.4 107.4 1.0 CHC B:CLA803 4.4 66.9 1.0 C3C A:CL0801 4.4 107.4 1.0 C3A A:CL0801 4.4 107.4 1.0 C2A A:CL0801 4.5 107.4 1.0 CBB B:CLA803 4.6 66.9 1.0 C2B B:CLA803 4.7 66.9 1.0 CE1 A:HIS675 4.8 67.2 1.0

Magnesium binding site 2 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:71.7 occ:1.00 MG A:CLA802 0.0 71.7 1.0 NB A:CLA802 2.0 71.7 1.0 ND A:CLA802 2.0 71.7 1.0 NA A:CLA802 2.1 71.7 1.0 NC A:CLA802 2.1 71.7 1.0 C4D A:CLA802 2.9 71.7 1.0 C1B A:CLA802 3.0 71.7 1.0 C4A A:CLA802 3.0 71.7 1.0 C4B A:CLA802 3.1 71.7 1.0 C1C A:CLA802 3.1 71.7 1.0 C4C A:CLA802 3.1 71.7 1.0 C1D A:CLA802 3.1 71.7 1.0 C1A A:CLA802 3.1 71.7 1.0 SD A:MET683 3.1 66.8 1.0 CHB A:CLA802 3.4 71.7 1.0 CHC A:CLA802 3.4 71.7 1.0 CHA A:CLA802 3.4 71.7 1.0 CHD A:CLA802 3.5 71.7 1.0 NE1 B:TRP582 3.6 69.4 1.0 CZ2 B:TRP582 3.7 69.4 1.0 CE2 B:TRP582 4.0 69.4 1.0 CG A:MET683 4.0 66.8 1.0 CE A:MET683 4.2 66.8 1.0 C3D A:CLA802 4.2 71.7 1.0 C2B A:CLA802 4.3 71.7 1.0 C3B A:CLA802 4.3 71.7 1.0 C2C A:CLA802 4.3 71.7 1.0 C2D A:CLA802 4.3 71.7 1.0 C3C A:CLA802 4.3 71.7 1.0 CB A:MET683 4.4 66.8 1.0 C3A A:CLA802 4.4 71.7 1.0 C2A A:CLA802 4.4 71.7 1.0 CH2 B:TRP582 4.9 69.4 1.0 CD1 B:TRP582 4.9 69.4 1.0 CBD A:CLA802 4.9 71.7 1.0

Magnesium binding site 3 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:80.4 occ:1.00 MG A:CLA803 0.0 80.4 1.0 NB A:CLA803 2.0 80.4 1.0 ND A:CLA803 2.0 80.4 1.0 NC A:CLA803 2.1 80.4 1.0 NA A:CLA803 2.1 80.4 1.0 NE2 A:HIS50 2.8 77.2 1.0 C4D A:CLA803 2.9 80.4 1.0 C1B A:CLA803 3.0 80.4 1.0 C4A A:CLA803 3.0 80.4 1.0 C4B A:CLA803 3.0 80.4 1.0 C1C A:CLA803 3.1 80.4 1.0 C4C A:CLA803 3.1 80.4 1.0 C1D A:CLA803 3.1 80.4 1.0 C1A A:CLA803 3.1 80.4 1.0 CHB A:CLA803 3.4 80.4 1.0 CHC A:CLA803 3.4 80.4 1.0 CHA A:CLA803 3.5 80.4 1.0 CG J:PRO12 3.5 85.1 1.0 CHD A:CLA803 3.5 80.4 1.0 CE1 A:HIS50 3.6 77.2 1.0 CD2 A:HIS50 3.9 77.2 1.0 CB J:PRO12 4.0 85.1 1.0 C3D A:CLA803 4.2 80.4 1.0 C2B A:CLA803 4.3 80.4 1.0 C3B A:CLA803 4.3 80.4 1.0 C2C A:CLA803 4.3 80.4 1.0 C2D A:CLA803 4.3 80.4 1.0 C3C A:CLA803 4.3 80.4 1.0 C3A A:CLA803 4.4 80.4 1.0 C2A A:CLA803 4.4 80.4 1.0 ND1 A:HIS50 4.8 77.2 1.0 C29 A:BCR851 4.8 88.1 1.0 CD J:PRO12 4.8 85.1 1.0 CBD A:CLA803 4.9 80.4 1.0 CG A:HIS50 5.0 77.2 1.0

Magnesium binding site 4 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:76.6 occ:1.00 MG A:CLA804 0.0 76.6 1.0 NB A:CLA804 2.0 76.6 1.0 ND A:CLA804 2.0 76.6 1.0 NC A:CLA804 2.1 76.6 1.0 NA A:CLA804 2.1 76.6 1.0 NE2 A:HIS54 2.8 75.4 1.0 C4D A:CLA804 2.9 76.6 1.0 C1B A:CLA804 3.0 76.6 1.0 C4B A:CLA804 3.0 76.6 1.0 C4A A:CLA804 3.0 76.6 1.0 C1C A:CLA804 3.0 76.6 1.0 C4C A:CLA804 3.1 76.6 1.0 C1D A:CLA804 3.1 76.6 1.0 C1A A:CLA804 3.1 76.6 1.0 CHB A:CLA804 3.4 76.6 1.0 CHC A:CLA804 3.4 76.6 1.0 CHA A:CLA804 3.4 76.6 1.0 CHD A:CLA804 3.5 76.6 1.0 CE1 A:HIS54 3.6 75.4 1.0 CD2 A:HIS54 3.8 75.4 1.0 C7 A:CLA810 4.1 76.8 1.0 C3D A:CLA804 4.2 76.6 1.0 C2B A:CLA804 4.3 76.6 1.0 C3B A:CLA804 4.3 76.6 1.0 C2C A:CLA804 4.3 76.6 1.0 C2D A:CLA804 4.3 76.6 1.0 C3C A:CLA804 4.4 76.6 1.0 C3A A:CLA804 4.4 76.6 1.0 C2A A:CLA804 4.4 76.6 1.0 C5 A:CLA810 4.7 76.8 1.0 ND1 A:HIS54 4.7 75.4 1.0 CG A:HIS54 4.8 75.4 1.0 C8 A:CLA810 4.8 76.8 1.0 CBD A:CLA804 4.9 76.6 1.0 C6 A:CLA810 4.9 76.8 1.0

Magnesium binding site 5 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:71.5 occ:1.00 MG A:CLA805 0.0 71.5 1.0 NB A:CLA805 2.0 71.5 1.0 ND A:CLA805 2.0 71.5 1.0 NA A:CLA805 2.1 71.5 1.0 NC A:CLA805 2.1 71.5 1.0 NE2 A:HIS74 2.8 69.5 1.0 C4D A:CLA805 2.9 71.5 1.0 C1B A:CLA805 3.0 71.5 1.0 C4A A:CLA805 3.0 71.5 1.0 C4B A:CLA805 3.0 71.5 1.0 C1C A:CLA805 3.0 71.5 1.0 C1A A:CLA805 3.1 71.5 1.0 C4C A:CLA805 3.1 71.5 1.0 CMB A:CLA829 3.1 69.7 1.0 C1D A:CLA805 3.1 71.5 1.0 CD2 A:HIS74 3.3 69.5 1.0 CHB A:CLA805 3.4 71.5 1.0 CHC A:CLA805 3.4 71.5 1.0 CHA A:CLA805 3.4 71.5 1.0 CHD A:CLA805 3.5 71.5 1.0 CE1 A:HIS74 4.0 69.5 1.0 C3D A:CLA805 4.2 71.5 1.0 C2B A:CLA805 4.3 71.5 1.0 C3B A:CLA805 4.3 71.5 1.0 C2C A:CLA805 4.3 71.5 1.0 C2D A:CLA805 4.3 71.5 1.0 C3C A:CLA805 4.3 71.5 1.0 C3A A:CLA805 4.4 71.5 1.0 C2A A:CLA805 4.4 71.5 1.0 CG A:HIS74 4.5 69.5 1.0 C2B A:CLA829 4.5 69.7 1.0 CBB A:CLA829 4.7 69.7 1.0 ND1 A:HIS74 4.8 69.5 1.0 CBD A:CLA805 4.9 71.5 1.0

Magnesium binding site 6 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:69.2 occ:1.00 MG A:CLA806 0.0 69.2 1.0 NB A:CLA806 2.0 69.2 1.0 ND A:CLA806 2.0 69.2 1.0 NC A:CLA806 2.1 69.2 1.0 NA A:CLA806 2.1 69.2 1.0 OE1 A:GLN77 2.9 71.0 1.0 C4D A:CLA806 2.9 69.2 1.0 C1B A:CLA806 3.0 69.2 1.0 C4A A:CLA806 3.0 69.2 1.0 C4B A:CLA806 3.0 69.2 1.0 C1C A:CLA806 3.1 69.2 1.0 C4C A:CLA806 3.1 69.2 1.0 C1D A:CLA806 3.1 69.2 1.0 C1A A:CLA806 3.1 69.2 1.0 CHB A:CLA806 3.4 69.2 1.0 CHC A:CLA806 3.4 69.2 1.0 CHA A:CLA806 3.5 69.2 1.0 C17 A:CLA806 3.5 69.2 1.0 CHD A:CLA806 3.5 69.2 1.0 CD A:GLN77 3.5 71.0 1.0 NE2 A:GLN77 3.8 71.0 1.0 C3D A:CLA806 4.2 69.2 1.0 C2B A:CLA806 4.2 69.2 1.0 C3B A:CLA806 4.3 69.2 1.0 C2C A:CLA806 4.3 69.2 1.0 C2D A:CLA806 4.3 69.2 1.0 C3C A:CLA806 4.3 69.2 1.0 C3A A:CLA806 4.4 69.2 1.0 C18 A:CLA806 4.4 69.2 1.0 C2A A:CLA806 4.4 69.2 1.0 C16 A:CLA806 4.6 69.2 1.0 CG A:GLN77 4.6 71.0 1.0 CBD A:CLA806 4.9 69.2 1.0 CMA A:CLA805 4.9 71.5 1.0

Magnesium binding site 7 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:78.0 occ:1.00 MG A:CLA807 0.0 78.0 1.0 NB A:CLA807 2.0 78.0 1.0 ND A:CLA807 2.0 78.0 1.0 NC A:CLA807 2.1 78.0 1.0 NA A:CLA807 2.1 78.0 1.0 NE2 A:HIS91 2.9 76.3 1.0 C4D A:CLA807 2.9 78.0 1.0 C1B A:CLA807 3.0 78.0 1.0 C4A A:CLA807 3.0 78.0 1.0 C4B A:CLA807 3.0 78.0 1.0 C1C A:CLA807 3.1 78.0 1.0 C4C A:CLA807 3.1 78.0 1.0 C1D A:CLA807 3.1 78.0 1.0 C1A A:CLA807 3.1 78.0 1.0 CHB A:CLA807 3.4 78.0 1.0 CHC A:CLA807 3.4 78.0 1.0 CHA A:CLA807 3.4 78.0 1.0 CHD A:CLA807 3.5 78.0 1.0 CE1 A:HIS91 3.5 76.3 1.0 CD2 A:HIS91 3.9 76.3 1.0 C3D A:CLA807 4.2 78.0 1.0 C2B A:CLA807 4.3 78.0 1.0 C3B A:CLA807 4.3 78.0 1.0 C2C A:CLA807 4.3 78.0 1.0 C2D A:CLA807 4.3 78.0 1.0 C3C A:CLA807 4.3 78.0 1.0 C3A A:CLA807 4.4 78.0 1.0 C2A A:CLA807 4.4 78.0 1.0 ND1 A:HIS91 4.7 76.3 1.0 CBD A:CLA807 4.9 78.0 1.0 CG A:HIS91 4.9 76.3 1.0

Magnesium binding site 8 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:74.9 occ:1.00 MG A:CLA808 0.0 74.9 1.0 NB A:CLA808 2.0 74.9 1.0 ND A:CLA808 2.0 74.9 1.0 NC A:CLA808 2.1 74.9 1.0 NA A:CLA808 2.1 74.9 1.0 OE1 A:GLN113 2.8 76.1 1.0 C4D A:CLA808 2.9 74.9 1.0 C1B A:CLA808 3.0 74.9 1.0 C4A A:CLA808 3.0 74.9 1.0 C4B A:CLA808 3.0 74.9 1.0 C1C A:CLA808 3.1 74.9 1.0 C4C A:CLA808 3.1 74.9 1.0 C1D A:CLA808 3.1 74.9 1.0 C1A A:CLA808 3.1 74.9 1.0 CHB A:CLA808 3.4 74.9 1.0 CHC A:CLA808 3.4 74.9 1.0 CHA A:CLA808 3.5 74.9 1.0 CHD A:CLA808 3.5 74.9 1.0 CD A:GLN113 3.6 76.1 1.0 NE2 A:GLN113 3.6 76.1 1.0 C3D A:CLA808 4.2 74.9 1.0 C2B A:CLA808 4.3 74.9 1.0 C3B A:CLA808 4.3 74.9 1.0 C4 A:CLA827 4.3 70.3 1.0 C2C A:CLA808 4.3 74.9 1.0 C2D A:CLA808 4.3 74.9 1.0 C3C A:CLA808 4.3 74.9 1.0 C3A A:CLA808 4.4 74.9 1.0 C2A A:CLA808 4.4 74.9 1.0 C5 A:CLA827 4.5 70.3 1.0 O1A A:CLA827 4.6 70.3 1.0 C3 A:CLA827 4.7 70.3 1.0 C6 A:CLA827 4.8 70.3 1.0 CBA A:CLA808 4.8 74.9 1.0 CBD A:CLA808 4.9 74.9 1.0 CG A:GLN113 4.9 76.1 1.0

Magnesium binding site 9 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:77.1 occ:1.00 MG A:CLA809 0.0 77.1 1.0 NB A:CLA809 2.0 77.1 1.0 ND A:CLA809 2.0 77.1 1.0 NC A:CLA809 2.1 77.1 1.0 NA A:CLA809 2.1 77.1 1.0 OE1 A:GLN121 2.8 79.2 1.0 C4D A:CLA809 2.9 77.1 1.0 C1B A:CLA809 3.0 77.1 1.0 C4A A:CLA809 3.0 77.1 1.0 C4B A:CLA809 3.0 77.1 1.0 C1C A:CLA809 3.1 77.1 1.0 C4C A:CLA809 3.1 77.1 1.0 C1D A:CLA809 3.1 77.1 1.0 C1A A:CLA809 3.1 77.1 1.0 CHB A:CLA809 3.4 77.1 1.0 CHC A:CLA809 3.4 77.1 1.0 CHA A:CLA809 3.5 77.1 1.0 CHD A:CLA809 3.5 77.1 1.0 C17 A:CLA827 3.7 70.3 1.0 CD A:GLN121 3.8 79.2 1.0 NE2 A:GLN121 4.1 79.2 1.0 C3D A:CLA809 4.2 77.1 1.0 C2B A:CLA809 4.3 77.1 1.0 C3B A:CLA809 4.3 77.1 1.0 C2C A:CLA809 4.3 77.1 1.0 C2D A:CLA809 4.3 77.1 1.0 C3C A:CLA809 4.4 77.1 1.0 C3A A:CLA809 4.4 77.1 1.0 C2A A:CLA809 4.4 77.1 1.0 C18 A:CLA827 4.6 70.3 1.0 C15 A:CLA827 4.8 70.3 1.0 C16 A:CLA827 4.8 70.3 1.0 CBD A:CLA809 4.9 77.1 1.0

Magnesium binding site 10 out of 149 in the Barley Photosystem I-Lhci-LHCA5 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Barley Photosystem I-Lhci-LHCA5 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:76.8 occ:1.00 MG A:CLA810 0.0 76.8 1.0 NB A:CLA810 2.0 76.8 1.0 ND A:CLA810 2.0 76.8 1.0 NC A:CLA810 2.1 76.8 1.0 NA A:CLA810 2.1 76.8 1.0 CE1 A:HIS179 2.9 73.0 1.0 C4D A:CLA810 2.9 76.8 1.0 O1A A:CLA804 3.0 76.6 1.0 C1B A:CLA810 3.0 76.8 1.0 C4A A:CLA810 3.0 76.8 1.0 C4B A:CLA810 3.1 76.8 1.0 C1C A:CLA810 3.1 76.8 1.0 C1A A:CLA810 3.1 76.8 1.0 C4C A:CLA810 3.1 76.8 1.0 NE2 A:HIS179 3.1 73.0 1.0 C1D A:CLA810 3.1 76.8 1.0 CHB A:CLA810 3.4 76.8 1.0 CHC A:CLA810 3.4 76.8 1.0 CHA A:CLA810 3.4 76.8 1.0 CHD A:CLA810 3.5 76.8 1.0 CGA A:CLA804 3.8 76.6 1.0 ND1 A:HIS179 4.1 73.0 1.0 C3D A:CLA810 4.2 76.8 1.0 C2B A:CLA810 4.3 76.8 1.0 C3B A:CLA810 4.3 76.8 1.0 C2C A:CLA810 4.3 76.8 1.0 C2D A:CLA810 4.3 76.8 1.0 C3C A:CLA810 4.3 76.8 1.0 C1 A:CLA804 4.4 76.6 1.0 C3A A:CLA810 4.4 76.8 1.0 C2A A:CLA810 4.4 76.8 1.0 CD2 A:HIS179 4.5 73.0 1.0 O2A A:CLA804 4.6 76.6 1.0 CBA A:CLA810 4.7 76.8 1.0 CBA A:CLA804 4.7 76.6 1.0 CAA A:CLA804 4.9 76.6 1.0 CBD A:CLA810 4.9 76.8 1.0 CG A:HIS179 5.0 73.0 1.0

L.Shen, K.Tang, W.Wang, C.Wang, H.Wu, Z.Mao, S.An, S.Chang, T.Kuang, J.R.Shen, G.Han, X.Zhang. Architecture of the Chloroplast Psi-Ndh Supercomplex in Hordeum Vulgare. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34879391
DOI: 10.1038/S41586-021-04277-6