Magnesium in PDB 7ewk: Barley Photosystem I-Lhci-LHCA6 Supercomplex

All present enzymatic activity of Barley Photosystem I-Lhci-LHCA6 Supercomplex:
1.97.1.12;

The structure of Barley Photosystem I-Lhci-LHCA6 Supercomplex also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 149;

Binding sites:

The binding sites of Magnesium atom in the Barley Photosystem I-Lhci-LHCA6 Supercomplex (pdb code 7ewk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 149 binding sites of Magnesium where determined in the Barley Photosystem I-Lhci-LHCA6 Supercomplex, PDB code: 7ewk:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:107.4 occ:1.00 MG A:CL0801 0.0 107.4 1.0 ND A:CL0801 2.0 107.4 1.0 NB A:CL0801 2.0 107.4 1.0 NC A:CL0801 2.1 107.4 1.0 NA A:CL0801 2.2 107.4 1.0 NE2 A:HIS675 2.4 80.5 1.0 CE1 A:HIS675 2.9 80.5 1.0 C4D A:CL0801 3.0 107.4 1.0 C4B A:CL0801 3.0 107.4 1.0 C1B A:CL0801 3.0 107.4 1.0 C1C A:CL0801 3.1 107.4 1.0 C1D A:CL0801 3.1 107.4 1.0 C4A A:CL0801 3.1 107.4 1.0 C4C A:CL0801 3.2 107.4 1.0 C1A A:CL0801 3.2 107.4 1.0 CHC A:CL0801 3.3 107.4 1.0 CHB A:CL0801 3.4 107.4 1.0 CHD A:CL0801 3.5 107.4 1.0 CHA A:CL0801 3.5 107.4 1.0 CAB B:CLA804 3.6 107.4 1.0 CD2 A:HIS675 3.7 80.5 1.0 C3B B:CLA804 3.8 107.4 1.0 CHC B:CLA804 3.9 107.4 1.0 C4B B:CLA804 4.0 107.4 1.0 ND1 A:HIS675 4.2 80.5 1.0 C3D A:CL0801 4.2 107.4 1.0 C3B A:CL0801 4.2 107.4 1.0 C2B A:CL0801 4.3 107.4 1.0 C2D A:CL0801 4.4 107.4 1.0 C2C A:CL0801 4.4 107.4 1.0 C3C A:CL0801 4.4 107.4 1.0 C3A A:CL0801 4.4 107.4 1.0 C2A A:CL0801 4.5 107.4 1.0 CG A:HIS675 4.6 80.5 1.0 C2B B:CLA804 4.7 107.4 1.0 CBB B:CLA804 4.7 107.4 1.0 C1C B:CLA804 4.7 107.4 1.0 NB B:CLA804 4.8 107.4 1.0

Magnesium binding site 2 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:71.9 occ:1.00 MG A:CLA802 0.0 71.9 1.0 NB A:CLA802 2.0 71.9 1.0 ND A:CLA802 2.0 71.9 1.0 NC A:CLA802 2.1 71.9 1.0 NA A:CLA802 2.1 71.9 1.0 C4D A:CLA802 2.9 71.9 1.0 C1B A:CLA802 3.0 71.9 1.0 C4B A:CLA802 3.0 71.9 1.0 C4A A:CLA802 3.0 71.9 1.0 C1C A:CLA802 3.1 71.9 1.0 C4C A:CLA802 3.1 71.9 1.0 C1D A:CLA802 3.2 71.9 1.0 C1A A:CLA802 3.2 71.9 1.0 CHB A:CLA802 3.4 71.9 1.0 CHC A:CLA802 3.4 71.9 1.0 CHA A:CLA802 3.5 71.9 1.0 CHD A:CLA802 3.5 71.9 1.0 C2B A:CLA802 4.2 71.9 1.0 C3B A:CLA802 4.2 71.9 1.0 C3D A:CLA802 4.2 71.9 1.0 CAB B:CLA805 4.3 70.3 1.0 CBB B:CLA805 4.3 70.3 1.0 C2C A:CLA802 4.3 71.9 1.0 C2D A:CLA802 4.4 71.9 1.0 C3C A:CLA802 4.4 71.9 1.0 C3A A:CLA802 4.4 71.9 1.0 C2A A:CLA802 4.4 71.9 1.0 CB B:ALA658 4.6 73.0 1.0 OD1 A:ASN599 4.8 71.6 1.0 CBD A:CLA802 4.9 71.9 1.0 C3B B:CLA805 5.0 70.3 1.0 C2 A:CL0801 5.0 107.4 1.0

Magnesium binding site 3 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:97.3 occ:1.00 MG A:CLA803 0.0 97.3 1.0 NB A:CLA803 2.0 97.3 1.0 ND A:CLA803 2.0 97.3 1.0 NA A:CLA803 2.1 97.3 1.0 NC A:CLA803 2.1 97.3 1.0 C4D A:CLA803 2.9 97.3 1.0 NE2 A:HIS54 3.0 89.2 1.0 C1B A:CLA803 3.0 97.3 1.0 C4A A:CLA803 3.0 97.3 1.0 C4B A:CLA803 3.0 97.3 1.0 C1C A:CLA803 3.1 97.3 1.0 C4C A:CLA803 3.1 97.3 1.0 C1A A:CLA803 3.1 97.3 1.0 C1D A:CLA803 3.2 97.3 1.0 CHB A:CLA803 3.4 97.3 1.0 CHC A:CLA803 3.4 97.3 1.0 CHA A:CLA803 3.5 97.3 1.0 CHD A:CLA803 3.5 97.3 1.0 CD2 A:HIS54 3.7 89.2 1.0 CE1 A:HIS54 4.0 89.2 1.0 C2B A:CLA803 4.3 97.3 1.0 C3D A:CLA803 4.3 97.3 1.0 C3B A:CLA803 4.3 97.3 1.0 C2C A:CLA803 4.3 97.3 1.0 C2D A:CLA803 4.4 97.3 1.0 C3C A:CLA803 4.4 97.3 1.0 C3A A:CLA803 4.4 97.3 1.0 C2A A:CLA803 4.4 97.3 1.0 C7 A:CLA810 4.5 101.3 1.0 C9 A:CLA810 4.7 101.3 1.0 C5 A:CLA810 4.8 101.3 1.0 CBA A:CLA803 4.8 97.3 1.0 CBD A:CLA803 4.9 97.3 1.0 C10 A:CLA810 4.9 101.3 1.0 CG A:HIS54 4.9 89.2 1.0 C8 A:CLA810 5.0 101.3 1.0

Magnesium binding site 4 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:83.5 occ:1.00 MG A:CLA804 0.0 83.5 1.0 NB A:CLA804 2.0 83.5 1.0 ND A:CLA804 2.0 83.5 1.0 NA A:CLA804 2.1 83.5 1.0 NC A:CLA804 2.1 83.5 1.0 C4D A:CLA804 2.9 83.5 1.0 C1B A:CLA804 3.0 83.5 1.0 C4A A:CLA804 3.0 83.5 1.0 C4B A:CLA804 3.1 83.5 1.0 C1C A:CLA804 3.1 83.5 1.0 C1A A:CLA804 3.1 83.5 1.0 C4C A:CLA804 3.1 83.5 1.0 C1D A:CLA804 3.2 83.5 1.0 NE2 A:HIS74 3.2 87.1 1.0 CMB A:CLA829 3.3 82.0 1.0 CHB A:CLA804 3.4 83.5 1.0 CHC A:CLA804 3.4 83.5 1.0 CHA A:CLA804 3.4 83.5 1.0 CHD A:CLA804 3.5 83.5 1.0 CD2 A:HIS74 3.7 87.1 1.0 C3D A:CLA804 4.2 83.5 1.0 C2B A:CLA804 4.3 83.5 1.0 C3B A:CLA804 4.3 83.5 1.0 C2C A:CLA804 4.3 83.5 1.0 CE1 A:HIS74 4.3 87.1 1.0 C2D A:CLA804 4.4 83.5 1.0 C3C A:CLA804 4.4 83.5 1.0 C3A A:CLA804 4.4 83.5 1.0 C2A A:CLA804 4.4 83.5 1.0 C2B A:CLA829 4.7 82.0 1.0 CBB A:CLA829 4.9 82.0 1.0 CBD A:CLA804 4.9 83.5 1.0 CG A:HIS74 5.0 87.1 1.0

Magnesium binding site 5 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:82.9 occ:1.00 MG A:CLA805 0.0 82.9 1.0 NB A:CLA805 2.0 82.9 1.0 ND A:CLA805 2.0 82.9 1.0 NC A:CLA805 2.1 82.9 1.0 NA A:CLA805 2.1 82.9 1.0 C4D A:CLA805 2.9 82.9 1.0 NE2 A:GLN77 3.0 86.5 1.0 C1B A:CLA805 3.0 82.9 1.0 C4A A:CLA805 3.0 82.9 1.0 C4B A:CLA805 3.1 82.9 1.0 C1C A:CLA805 3.1 82.9 1.0 C4C A:CLA805 3.1 82.9 1.0 C1A A:CLA805 3.1 82.9 1.0 C1D A:CLA805 3.2 82.9 1.0 CHB A:CLA805 3.4 82.9 1.0 CHC A:CLA805 3.4 82.9 1.0 CHA A:CLA805 3.5 82.9 1.0 CHD A:CLA805 3.5 82.9 1.0 OE1 A:GLN77 3.7 86.5 1.0 CD A:GLN77 3.7 86.5 1.0 C3D A:CLA805 4.2 82.9 1.0 C2B A:CLA805 4.3 82.9 1.0 C3B A:CLA805 4.3 82.9 1.0 C2C A:CLA805 4.3 82.9 1.0 C2D A:CLA805 4.4 82.9 1.0 C3C A:CLA805 4.4 82.9 1.0 C3A A:CLA805 4.4 82.9 1.0 C2A A:CLA805 4.5 82.9 1.0 CBD A:CLA805 4.9 82.9 1.0 CMA A:CLA804 5.0 83.5 1.0

Magnesium binding site 6 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:104.2 occ:1.00 MG A:CLA806 0.0 104.2 1.0 NB A:CLA806 2.0 104.2 1.0 ND A:CLA806 2.0 104.2 1.0 NA A:CLA806 2.1 104.2 1.0 NC A:CLA806 2.1 104.2 1.0 C4D A:CLA806 2.9 104.2 1.0 C1B A:CLA806 3.0 104.2 1.0 NE2 A:HIS91 3.0 101.9 1.0 C4A A:CLA806 3.0 104.2 1.0 C4B A:CLA806 3.1 104.2 1.0 C1C A:CLA806 3.1 104.2 1.0 C4C A:CLA806 3.1 104.2 1.0 C1A A:CLA806 3.1 104.2 1.0 C1D A:CLA806 3.2 104.2 1.0 CHB A:CLA806 3.4 104.2 1.0 CHC A:CLA806 3.4 104.2 1.0 CHA A:CLA806 3.5 104.2 1.0 CHD A:CLA806 3.5 104.2 1.0 CE1 A:HIS91 3.9 101.9 1.0 CD2 A:HIS91 3.9 101.9 1.0 C3D A:CLA806 4.3 104.2 1.0 C2B A:CLA806 4.3 104.2 1.0 C3B A:CLA806 4.3 104.2 1.0 C2C A:CLA806 4.3 104.2 1.0 C2D A:CLA806 4.4 104.2 1.0 C3C A:CLA806 4.4 104.2 1.0 C3A A:CLA806 4.4 104.2 1.0 C2A A:CLA806 4.5 104.2 1.0 CBD A:CLA806 4.9 104.2 1.0 ND1 A:HIS91 5.0 101.9 1.0

Magnesium binding site 7 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:90.2 occ:1.00 MG A:CLA807 0.0 90.2 1.0 NB A:CLA807 2.0 90.2 1.0 ND A:CLA807 2.0 90.2 1.0 NC A:CLA807 2.1 90.2 1.0 NA A:CLA807 2.1 90.2 1.0 C4D A:CLA807 2.9 90.2 1.0 C1B A:CLA807 3.0 90.2 1.0 C4A A:CLA807 3.0 90.2 1.0 C4B A:CLA807 3.1 90.2 1.0 C1C A:CLA807 3.1 90.2 1.0 C4C A:CLA807 3.1 90.2 1.0 C1D A:CLA807 3.2 90.2 1.0 C1A A:CLA807 3.2 90.2 1.0 OE1 A:GLN113 3.2 99.9 1.0 NE2 A:GLN113 3.2 99.9 1.0 CHB A:CLA807 3.4 90.2 1.0 CHC A:CLA807 3.4 90.2 1.0 CHA A:CLA807 3.5 90.2 1.0 CHD A:CLA807 3.5 90.2 1.0 CD A:GLN113 3.6 99.9 1.0 C3D A:CLA807 4.3 90.2 1.0 C2B A:CLA807 4.3 90.2 1.0 C3B A:CLA807 4.3 90.2 1.0 C2C A:CLA807 4.3 90.2 1.0 C2D A:CLA807 4.4 90.2 1.0 C3C A:CLA807 4.4 90.2 1.0 C3A A:CLA807 4.4 90.2 1.0 C2A A:CLA807 4.5 90.2 1.0 CBD A:CLA807 4.9 90.2 1.0

Magnesium binding site 8 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:110.7 occ:1.00 MG A:CLA808 0.0 110.7 1.0 NB A:CLA808 2.0 110.7 1.0 ND A:CLA808 2.0 110.7 1.0 NC A:CLA808 2.1 110.7 1.0 NA A:CLA808 2.1 110.7 1.0 OE1 A:GLN121 2.9 113.0 1.0 C4D A:CLA808 2.9 110.7 1.0 C1B A:CLA808 3.0 110.7 1.0 C4A A:CLA808 3.0 110.7 1.0 C4B A:CLA808 3.1 110.7 1.0 C1C A:CLA808 3.1 110.7 1.0 C4C A:CLA808 3.1 110.7 1.0 C1A A:CLA808 3.2 110.7 1.0 C1D A:CLA808 3.2 110.7 1.0 CHB A:CLA808 3.4 110.7 1.0 CHC A:CLA808 3.4 110.7 1.0 CHA A:CLA808 3.5 110.7 1.0 CHD A:CLA808 3.5 110.7 1.0 CD A:GLN121 3.8 113.0 1.0 NE2 A:GLN121 3.8 113.0 1.0 C3D A:CLA808 4.3 110.7 1.0 C2B A:CLA808 4.3 110.7 1.0 C3B A:CLA808 4.3 110.7 1.0 C2C A:CLA808 4.3 110.7 1.0 C2D A:CLA808 4.4 110.7 1.0 C3C A:CLA808 4.4 110.7 1.0 C3A A:CLA808 4.4 110.7 1.0 C2A A:CLA808 4.5 110.7 1.0 CG1 A:VAL119 4.8 112.1 1.0 CBD A:CLA808 4.9 110.7 1.0

Magnesium binding site 9 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:96.6 occ:1.00 MG A:CLA809 0.0 96.6 1.0 NB A:CLA809 2.0 96.6 1.0 ND A:CLA809 2.0 96.6 1.0 NA A:CLA809 2.1 96.6 1.0 NC A:CLA809 2.1 96.6 1.0 NE2 A:HIS177 2.8 98.1 1.0 C4D A:CLA809 2.9 96.6 1.0 C1B A:CLA809 3.0 96.6 1.0 C4A A:CLA809 3.0 96.6 1.0 C4B A:CLA809 3.1 96.6 1.0 C1C A:CLA809 3.1 96.6 1.0 C4C A:CLA809 3.1 96.6 1.0 C1D A:CLA809 3.1 96.6 1.0 C1A A:CLA809 3.1 96.6 1.0 CHB A:CLA809 3.4 96.6 1.0 CHC A:CLA809 3.4 96.6 1.0 CHA A:CLA809 3.5 96.6 1.0 CHD A:CLA809 3.5 96.6 1.0 CE1 A:HIS177 3.6 98.1 1.0 CD2 A:HIS177 3.9 98.1 1.0 C3D A:CLA809 4.3 96.6 1.0 C2B A:CLA809 4.3 96.6 1.0 C3B A:CLA809 4.3 96.6 1.0 C2C A:CLA809 4.3 96.6 1.0 C2D A:CLA809 4.4 96.6 1.0 C3C A:CLA809 4.4 96.6 1.0 C3A A:CLA809 4.4 96.6 1.0 C2A A:CLA809 4.4 96.6 1.0 ND1 A:HIS177 4.8 98.1 1.0 CBA A:CLA809 4.8 96.6 1.0 CG A:HIS177 4.9 98.1 1.0 CBD A:CLA809 5.0 96.6 1.0

Magnesium binding site 10 out of 149 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:101.3 occ:1.00 MG A:CLA810 0.0 101.3 1.0 NB A:CLA810 2.0 101.3 1.0 ND A:CLA810 2.0 101.3 1.0 NA A:CLA810 2.1 101.3 1.0 NC A:CLA810 2.1 101.3 1.0 O1A A:CLA803 2.9 97.3 1.0 C4D A:CLA810 2.9 101.3 1.0 NE2 A:HIS179 2.9 100.6 1.0 C1B A:CLA810 3.0 101.3 1.0 C4A A:CLA810 3.0 101.3 1.0 C4B A:CLA810 3.1 101.3 1.0 C1C A:CLA810 3.1 101.3 1.0 C4C A:CLA810 3.1 101.3 1.0 C1A A:CLA810 3.1 101.3 1.0 C1D A:CLA810 3.2 101.3 1.0 CHB A:CLA810 3.4 101.3 1.0 CHC A:CLA810 3.4 101.3 1.0 CHA A:CLA810 3.5 101.3 1.0 CE1 A:HIS179 3.5 100.6 1.0 CHD A:CLA810 3.5 101.3 1.0 CGA A:CLA803 4.0 97.3 1.0 CD2 A:HIS179 4.1 100.6 1.0 C3D A:CLA810 4.3 101.3 1.0 C2B A:CLA810 4.3 101.3 1.0 C3B A:CLA810 4.3 101.3 1.0 C2C A:CLA810 4.3 101.3 1.0 C2D A:CLA810 4.4 101.3 1.0 C3C A:CLA810 4.4 101.3 1.0 C3A A:CLA810 4.4 101.3 1.0 C2A A:CLA810 4.5 101.3 1.0 C1 A:CLA803 4.6 97.3 1.0 CAA A:CLA803 4.7 97.3 1.0 O2A A:CLA803 4.7 97.3 1.0 ND1 A:HIS179 4.8 100.6 1.0 CD2 A:TYR178 4.8 101.7 1.0 CBD A:CLA810 4.9 101.3 1.0 CBA A:CLA803 5.0 97.3 1.0

L.Shen, K.Tang, W.Wang, C.Wang, H.Wu, Z.Mao, S.An, S.Chang, T.Kuang, J.R.Shen, G.Han, X.Zhang. Architecture of the Chloroplast Psi-Ndh Supercomplex in Hordeum Vulgare. Nature V. 601 649 2022.
ISSN: ESSN 1476-4687
PubMed: 34879391
DOI: 10.1038/S41586-021-04277-6