Magnesium in PDB 7ezi: Rice L-Galactose Dehydrogenase (Apo Form)

The structure of Rice L-Galactose Dehydrogenase (Apo Form), PDB code: 7ezi was solved by M.Momma, Z.Fujimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.09 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.745, 54.877, 56.753, 90, 102.27, 90
R / Rfree (%)	15.2 / 18.7

The binding sites of Magnesium atom in the Rice L-Galactose Dehydrogenase (Apo Form) (pdb code 7ezi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rice L-Galactose Dehydrogenase (Apo Form), PDB code: 7ezi:

Magnesium binding site 1 out of 1 in the Rice L-Galactose Dehydrogenase (Apo Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rice L-Galactose Dehydrogenase (Apo Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:26.2 occ:1.00 O A:HOH529 2.0 30.4 1.0 O A:HOH656 2.1 27.5 1.0 O A:HOH719 2.2 33.2 1.0 OD1 A:ASP127 2.2 16.4 1.0 OD2 A:ASP129 2.3 28.9 1.0 O A:HOH518 2.5 28.4 1.0 CG A:ASP127 3.1 16.4 1.0 CG A:ASP129 3.2 16.8 1.0 OD2 A:ASP127 3.4 23.5 1.0 CB A:ASP129 3.9 14.9 1.0 OXT A:ALA316 3.9 84.8 1.0 OD1 A:ASP129 4.1 16.3 1.0 N A:ASP129 4.1 12.3 1.0 OH A:TYR163 4.1 19.4 1.0 O A:HOH744 4.2 33.1 1.0 OE1 A:GLN315 4.4 19.9 1.0 CB A:ASP127 4.4 15.7 1.0 N A:LEU128 4.5 12.2 1.0 C A:ALA316 4.5 70.6 1.0 CA A:ASP129 4.6 13.9 1.0 N A:ALA316 4.6 49.7 1.0 CA A:ASP127 4.7 13.6 1.0 C A:ASP127 4.8 12.1 1.0 CZ A:TYR163 4.9 16.1 1.0 C A:GLN315 5.0 64.4 1.0

M.Momma, Z.Fujimoto. Crystal Structure of Rice L-Galactose Dehydrogenase To Be Published.