Magnesium in PDB 7ezl: Rice L-Galactose Dehydrogenase (Holo Form)

Protein crystallography data

The structure of Rice L-Galactose Dehydrogenase (Holo Form), PDB code: 7ezl was solved by M.Momma, Z.Fujimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.80 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.838, 55.17, 56.911, 90, 101.53, 90
R / Rfree (%) 20.9 / 25.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rice L-Galactose Dehydrogenase (Holo Form) (pdb code 7ezl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rice L-Galactose Dehydrogenase (Holo Form), PDB code: 7ezl:

Magnesium binding site 1 out of 1 in 7ezl

Go back to Magnesium Binding Sites List in 7ezl
Magnesium binding site 1 out of 1 in the Rice L-Galactose Dehydrogenase (Holo Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rice L-Galactose Dehydrogenase (Holo Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:59.9
occ:1.00
O A:HOH558 2.1 45.1 1.0
OD2 A:ASP129 2.2 41.3 1.0
OD1 A:ASP127 2.7 39.1 1.0
CB A:ALA316 3.0 100.0 1.0
CG A:ASP129 3.3 37.3 1.0
CG A:ASP127 3.6 40.1 1.0
OH A:TYR163 3.7 45.0 1.0
OD2 A:ASP127 3.8 44.7 1.0
CB A:ASP129 4.0 31.5 1.0
OD1 A:ASP129 4.2 38.0 1.0
CA A:ALA316 4.2 105.5 1.0
N A:ALA316 4.2 97.7 1.0
N A:ASP129 4.4 26.5 1.0
CZ A:TYR163 4.7 46.8 1.0
OE1 A:GLN315 4.7 44.1 1.0
CA A:ASP129 4.8 28.7 1.0
N A:LEU128 4.9 26.6 1.0
CB A:ASP127 4.9 32.9 1.0

Reference:

M.Momma, Z.Fujimoto. Crystal Structure of Rice L-Galactose Dehydrogenase To Be Published.
Page generated: Sun Jul 11 17:36:32 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy