Magnesium in PDB 7f04: Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp.

All present enzymatic activity of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp.:
7.6.2.5;

The structure of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp. also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Magnesium atom in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp. (pdb code 7f04). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp., PDB code: 7f04:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg300 b:38.8 occ:1.00 O3G A:ATP301 1.7 40.0 1.0 O2B A:ATP301 1.8 40.0 1.0 OG1 A:THR41 2.0 36.8 1.0 O A:HOH401 2.1 37.5 1.0 NE2 A:HIS81 2.1 38.2 1.0 O A:HOH402 2.2 37.3 1.0 CD2 A:HIS81 3.0 38.2 1.0 PG A:ATP301 3.0 40.0 1.0 PB A:ATP301 3.1 40.0 1.0 CB A:THR41 3.1 36.8 1.0 CE1 A:HIS81 3.1 38.2 1.0 O3B A:ATP301 3.3 40.0 1.0 O1G A:ATP301 3.7 40.0 1.0 OD1 A:ASP151 4.0 36.9 1.0 N A:THR41 4.0 36.8 1.0 CA A:THR41 4.1 36.8 1.0 O3A A:ATP301 4.1 40.0 1.0 CG2 A:THR41 4.1 36.8 1.0 CG A:HIS81 4.1 38.2 1.0 O1B A:ATP301 4.1 40.0 1.0 ND1 A:HIS81 4.2 38.2 1.0 O2G A:ATP301 4.2 40.0 1.0 CB E:ALA129 4.2 36.1 1.0 OD2 A:ASP151 4.2 36.9 1.0 O1A A:ATP301 4.2 40.0 1.0 CG A:ASP151 4.4 36.9 1.0 N E:ALA129 4.6 36.1 1.0 PA A:ATP301 4.6 40.0 1.0 OE2 A:GLU152 4.9 38.5 1.0 O2A A:ATP301 5.0 40.0 1.0

Magnesium binding site 2 out of 2 in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Atp. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg300 b:39.3 occ:1.00 O2B E:ATP301 1.8 42.4 1.0 OG1 E:THR41 2.0 38.1 1.0 O3G E:ATP301 2.1 42.4 1.0 O E:HOH402 2.1 37.2 1.0 O E:HOH401 2.1 36.5 1.0 NE2 E:HIS81 2.1 36.6 1.0 CE1 E:HIS81 3.1 36.6 1.0 CD2 E:HIS81 3.1 36.6 1.0 PB E:ATP301 3.1 42.4 1.0 CB E:THR41 3.2 38.1 1.0 PG E:ATP301 3.3 42.4 1.0 O3B E:ATP301 3.5 42.4 1.0 OD2 E:ASP151 4.0 35.9 1.0 OD1 E:ASP151 4.0 35.9 1.0 CB A:ALA129 4.0 39.9 1.0 O1B E:ATP301 4.1 42.4 1.0 N E:THR41 4.1 38.1 1.0 O1G E:ATP301 4.1 42.4 1.0 CA E:THR41 4.2 38.1 1.0 CG2 E:THR41 4.2 38.1 1.0 ND1 E:HIS81 4.2 36.6 1.0 O3A E:ATP301 4.2 42.4 1.0 CG E:HIS81 4.2 36.6 1.0 O1A E:ATP301 4.3 42.4 1.0 CG E:ASP151 4.4 35.9 1.0 OE2 E:GLU152 4.5 37.5 1.0 O2G E:ATP301 4.5 42.4 1.0 PA E:ATP301 4.6 42.4 1.0 N A:ALA129 4.8 39.9 1.0 O2A E:ATP301 4.9 42.4 1.0 CB A:SER128 4.9 40.8 1.0 CD E:GLU152 5.0 37.5 1.0 C A:SER128 5.0 40.8 1.0

J.Li, W.Zheng, M.Gu, L.Han, Y.Luo, K.Yu, M.Sun, Y.Zong, X.Ma, B.Liu, E.P.Lowder, D.L.Mendez, R.G.Kranz, K.Zhang, J.Zhu. Structures of the Ccmabcd Heme Release Complex at Multiple States. Nat Commun V. 13 6422 2022.
ISSN: ESSN 2041-1723
PubMed: 36307425
DOI: 10.1038/S41467-022-34136-5