Magnesium in PDB 7f1o: Cryo-Em Structure of the Gdp-Bound Dopamine Receptor 1 and Mini-Gs Complex with NB35

The binding sites of Magnesium atom in the Cryo-Em Structure of the Gdp-Bound Dopamine Receptor 1 and Mini-Gs Complex with NB35 (pdb code 7f1o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Gdp-Bound Dopamine Receptor 1 and Mini-Gs Complex with NB35, PDB code: 7f1o:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Gdp-Bound Dopamine Receptor 1 and Mini-Gs Complex with NB35


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Gdp-Bound Dopamine Receptor 1 and Mini-Gs Complex with NB35 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:83.4 occ:1.00 O2B A:GDP402 2.2 94.7 1.0 OG A:SER54 2.3 85.3 1.0 OD2 A:ASP223 3.3 75.3 1.0 PB A:GDP402 3.4 94.7 1.0 O1B A:GDP402 3.7 94.7 1.0 CB A:SER54 3.7 85.3 1.0 O3A A:GDP402 4.4 94.7 1.0 N A:SER54 4.4 85.3 1.0 O3B A:GDP402 4.5 94.7 1.0 CG A:ASP223 4.5 75.3 1.0 CA A:SER54 4.5 85.3 1.0 CA A:GLY225 4.7 81.9 1.0 CE A:LYS53 4.7 80.8 1.0 NZ A:LYS53 4.8 80.8 1.0 CB A:LYS53 4.9 80.8 1.0

X.Teng, S.Chen, Q.Wang, Z.Chen, X.Wang, N.Huang, S.Zheng. Structural Insights Into G Protein Activation By D1 Dopamine Receptor. Sci Adv V. 8 O4158 2022.
ISSN: ESSN 2375-2548
PubMed: 35687690
DOI: 10.1126/SCIADV.ABO4158