Magnesium in PDB 7f2u: Fmnb Complexed with Adp

All present enzymatic activity of Fmnb Complexed with Adp:
2.7.1.180;

The structure of Fmnb Complexed with Adp, PDB code: 7f2u was solved by W.Cheng, Y.H.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.58 / 1.98
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.02, 66.489, 109.1, 90, 95.61, 90
R / Rfree (%)	20.4 / 24.8

The binding sites of Magnesium atom in the Fmnb Complexed with Adp (pdb code 7f2u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Fmnb Complexed with Adp, PDB code: 7f2u:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Fmnb Complexed with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fmnb Complexed with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:45.1 occ:1.00 O3B A:ADP401 2.2 52.2 1.0 O2A A:ADP401 2.4 50.8 1.0 OD1 A:ASP301 2.5 30.4 1.0 O A:HOH576 3.0 22.2 1.0 OD1 A:ASN216 3.2 36.7 1.0 CG A:ASP301 3.4 26.4 1.0 O A:HOH521 3.4 32.7 1.0 PB A:ADP401 3.6 63.3 1.0 CE A:LYS190 3.6 33.3 1.0 OD2 A:ASP301 3.7 27.7 1.0 PA A:ADP401 3.7 49.0 1.0 MG A:MG403 3.8 36.1 1.0 O3A A:ADP401 4.0 49.4 1.0 CG A:ASN216 4.1 32.5 1.0 O2B A:ADP401 4.2 45.4 1.0 CG1 A:VAL255 4.2 24.0 1.0 NZ A:LYS190 4.3 48.9 1.0 ND2 A:ASN216 4.3 31.1 1.0 CB A:LYS190 4.5 27.9 1.0 CB A:ASP301 4.5 31.9 1.0 O A:GLY215 4.5 32.5 1.0 O5' A:ADP401 4.6 37.8 1.0 O1A A:ADP401 4.7 40.2 1.0 CD A:LYS190 4.8 32.4 1.0 O1B A:ADP401 4.8 51.9 1.0 O A:ALA187 4.9 23.4 1.0 CG A:LYS190 5.0 29.0 1.0 C A:GLY215 5.0 40.2 1.0 CA A:ASP301 5.0 28.2 1.0

Magnesium binding site 2 out of 4 in the Fmnb Complexed with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fmnb Complexed with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:36.1 occ:1.00 O A:ALA187 2.4 23.4 1.0 O2A A:ADP401 2.5 50.8 1.0 O A:HOH506 2.7 29.3 1.0 O A:HOH521 2.8 32.7 1.0 O A:ASP301 3.1 36.0 1.0 OD1 A:ASP301 3.2 30.4 1.0 C A:ALA187 3.3 24.0 1.0 PA A:ADP401 3.3 49.0 1.0 CB A:ASP301 3.4 31.9 1.0 CA A:ASP301 3.4 28.2 1.0 O1A A:ADP401 3.5 40.2 1.0 CA A:ALA187 3.5 28.6 1.0 CG A:ASP301 3.6 26.4 1.0 C A:ASP301 3.6 27.8 1.0 CB A:ALA187 3.7 23.6 1.0 MG A:MG402 3.8 45.1 1.0 CB A:SER304 3.8 30.2 1.0 O5' A:ADP401 3.9 37.8 1.0 OG A:SER304 4.1 36.6 1.0 OD2 A:ASP301 4.4 27.7 1.0 O A:HOH576 4.4 22.2 1.0 N A:ILE188 4.5 20.1 1.0 OG1 A:THR305 4.6 32.2 1.0 N A:GLY302 4.8 26.4 1.0 N A:ASP301 4.8 25.2 1.0 O3A A:ADP401 4.9 49.4 1.0 C5' A:ADP401 4.9 35.2 1.0 N A:ALA187 5.0 20.6 1.0 O3B A:ADP401 5.0 52.2 1.0

Magnesium binding site 3 out of 4 in the Fmnb Complexed with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fmnb Complexed with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:41.3 occ:1.00 O1A B:ADP401 2.2 46.3 1.0 OD1 B:ASP301 2.2 29.7 1.0 O B:HOH509 2.8 51.8 1.0 O3B B:ADP401 3.1 52.5 1.0 O B:HOH539 3.2 26.3 1.0 O B:HOH537 3.2 36.1 1.0 CG B:ASP301 3.3 27.7 1.0 ND2 B:ASN216 3.4 42.9 1.0 PA B:ADP401 3.6 45.1 1.0 MG B:MG403 3.6 36.8 1.0 OD2 B:ASP301 3.6 28.1 1.0 OD1 B:ASN216 3.8 49.8 1.0 CE B:LYS190 3.8 32.2 1.0 PB B:ADP401 3.9 55.3 1.0 O1B B:ADP401 4.0 48.4 1.0 CG B:ASN216 4.0 37.2 1.0 O3A B:ADP401 4.1 48.0 1.0 CG1 B:VAL255 4.1 25.6 1.0 O2A B:ADP401 4.4 40.0 1.0 CB B:ASP301 4.5 27.1 1.0 NZ B:LYS190 4.6 48.0 1.0 O5' B:ADP401 4.6 38.8 1.0 CB B:LYS190 4.8 28.8 1.0 O B:THR256 4.8 31.4 1.0 O B:ALA187 4.8 23.8 1.0 CA B:ASP301 4.9 29.5 1.0 O B:GLY215 4.9 37.4 1.0

Magnesium binding site 4 out of 4 in the Fmnb Complexed with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Fmnb Complexed with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:36.8 occ:1.00 O B:ALA187 2.4 23.8 1.0 O1A B:ADP401 2.7 46.3 1.0 O B:HOH537 2.8 36.1 1.0 OD1 B:ASP301 2.8 29.7 1.0 O B:HOH510 2.9 34.5 1.0 O B:ASP301 2.9 34.4 1.0 C B:ALA187 3.3 29.6 1.0 CA B:ASP301 3.4 29.5 1.0 CG B:ASP301 3.4 27.7 1.0 PA B:ADP401 3.5 45.1 1.0 C B:ASP301 3.5 27.5 1.0 CB B:ASP301 3.5 27.1 1.0 CA B:ALA187 3.5 30.3 1.0 MG B:MG402 3.6 41.3 1.0 O2A B:ADP401 3.6 40.0 1.0 CB B:ALA187 3.7 24.2 1.0 O5' B:ADP401 3.9 38.8 1.0 CB B:SER304 4.1 34.6 1.0 O B:HOH539 4.1 26.3 1.0 OD2 B:ASP301 4.4 28.1 1.0 N B:ILE188 4.5 22.1 1.0 OG B:SER304 4.5 40.0 1.0 N B:GLY302 4.7 27.6 1.0 N B:ASP301 4.8 25.4 1.0 OG1 B:THR305 4.9 38.3 1.0 N B:ALA187 4.9 27.2 1.0 C5' B:ADP401 4.9 36.0 1.0 CA B:ILE188 5.0 22.7 1.0

W.Cheng, Y.H.Zheng. Structure of Fmnb Complexed with Adp To Be Published.