Magnesium in PDB 7f4y: Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes

Enzymatic activity of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes

All present enzymatic activity of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes, PDB code: 7f4y was solved by H.-S.Youn, J.Park, J.Y.An, Y.Lee, S.H.Eom, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.01 / 2.20
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	164.44, 164.44, 165.601, 90, 90, 120
*R / R_free (%)*	19.4 / 24.5

Other elements in 7f4y:

The structure of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes (pdb code 7f4y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes, PDB code: 7f4y:

Magnesium binding site 1 out of 1 in 7f4y

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Magnesium Binding Sites List in 7f4y

Magnesium binding site 1 out of 1 in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg1003 b:64.2 occ:1.00	OE2	B:GLU768	2.2	66.4	1.0
	O	B:HOH1407	2.7	55.3	1.0
	O	B:HOH1541	3.2	43.1	1.0
	CD	B:GLU768	3.4	77.9	1.0
	CE2	B:PHE764	3.8	31.2	1.0
	CB	B:GLU768	3.9	46.4	1.0
	CA	B:LYS765	4.0	36.6	1.0
	CG	B:GLU768	4.0	53.7	1.0
	O	B:HOH1554	4.1	60.2	1.0
	CD2	B:PHE764	4.1	28.9	1.0
	OE1	B:GLU768	4.3	77.2	1.0
	CG	B:LYS765	4.3	57.8	1.0
	OE2	B:GLU892	4.4	35.1	0.5
	CB	B:LYS765	4.5	43.8	1.0
	O	B:LYS765	4.6	34.1	1.0
	N	B:LYS765	4.8	31.3	1.0
	O	B:PHE764	4.9	29.3	1.0
	C	B:LYS765	4.9	35.0	1.0
	CZ	B:PHE764	4.9	31.6	1.0

Reference:

H.-S.Youn, J.Park, J.Y.An, Y.Lee, S.H.Eom, J.Wang. Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes To Be Published.

Page generated: Wed Oct 2 21:11:04 2024

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