Atomistry » Magnesium » PDB 7f6e-7fs6 » 7f7a
Atomistry »
  Magnesium »
    PDB 7f6e-7fs6 »
      7f7a »

Magnesium in PDB 7f7a: Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9

Protein crystallography data

The structure of Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9, PDB code: 7f7a was solved by N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.06 / 2.70
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 168.581, 168.581, 168.581, 90, 90, 90
R / Rfree (%) 19.2 / 25.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9 (pdb code 7f7a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9, PDB code: 7f7a:

Magnesium binding site 1 out of 1 in 7f7a

Go back to Magnesium Binding Sites List in 7f7a
Magnesium binding site 1 out of 1 in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenine at pH 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:35.7
occ:1.00
OD2 A:ASP87 2.0 43.7 1.0
O A:HOH426 2.1 45.0 1.0
O A:ASP89 2.2 44.2 1.0
O A:HOH401 2.2 32.7 1.0
OD1 A:ASP208 2.5 43.0 1.0
CG A:ASP87 3.1 38.8 1.0
C A:ASP89 3.4 31.2 1.0
CG A:ASP208 3.4 43.3 1.0
OD2 A:ASP208 3.6 33.7 1.0
OD1 A:ASP87 3.6 42.4 1.0
CB A:ASP89 3.8 30.5 1.0
CA A:ASP89 3.9 35.4 1.0
NE2 A:GLN209 4.0 46.9 1.0
O A:HOH431 4.0 49.6 1.0
N A:ASP89 4.1 36.9 1.0
OD2 A:ASP212 4.2 38.8 1.0
OG1 A:THR91 4.2 27.9 1.0
OH A:TYR251 4.2 27.9 1.0
CB A:ASP87 4.4 39.6 1.0
N A:GLU90 4.5 28.0 1.0
CB A:GLU90 4.7 27.2 1.0
CB A:ASP208 4.8 26.9 1.0
N A:THR91 4.9 27.8 1.0
OD1 A:ASP212 4.9 42.1 1.0
C A:VAL88 4.9 36.3 1.0
CA A:GLU90 4.9 36.2 1.0
C A:GLU90 4.9 27.4 1.0
CD A:GLN209 4.9 38.3 1.0
CG A:ASP212 4.9 36.6 1.0
CG A:GLN209 5.0 27.6 1.0

Reference:

N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde. Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms To Be Published.
Page generated: Wed Oct 2 21:33:22 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy