Magnesium in PDB 7f7d: Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5

The structure of Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5, PDB code: 7f7d was solved by N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.98 / 2.20
Space group	I 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	167.937, 167.937, 167.937, 90, 90, 90
R / Rfree (%)	16.5 / 20.2

The binding sites of Magnesium atom in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5 (pdb code 7f7d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5, PDB code: 7f7d:

Magnesium binding site 1 out of 1 in the Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Non-Specific Class-C Acid Phosphatase From Sphingobium Sp. Rsms Bound to Adenosine at pH 5.5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:13.5 occ:1.00 O4 A:PO4304 2.0 18.2 1.0 OD2 A:ASP87 2.0 17.7 1.0 O A:HOH426 2.1 14.7 1.0 O A:HOH408 2.2 14.4 1.0 OD1 A:ASP208 2.2 15.8 1.0 O A:ASP89 2.3 15.9 1.0 CG A:ASP87 2.9 17.2 1.0 OD1 A:ASP87 3.1 18.1 1.0 CG A:ASP208 3.1 17.1 1.0 C A:ASP89 3.4 15.8 1.0 P A:PO4304 3.4 23.3 1.0 OD2 A:ASP208 3.4 13.1 1.0 O1 A:PO4304 3.9 15.9 1.0 N A:ASP89 3.9 15.9 1.0 CA A:ASP89 3.9 18.6 1.0 OD2 A:ASP212 3.9 16.2 1.0 CB A:ASP89 4.0 16.8 1.0 O2 A:PO4304 4.1 18.1 1.0 OG1 A:THR91 4.1 15.1 1.0 CB A:ASP87 4.2 17.6 1.0 CG A:GLN209 4.4 19.3 1.0 OH A:TYR251 4.4 16.1 1.0 O3 A:PO4304 4.5 19.4 1.0 CB A:ASP208 4.5 12.9 1.0 N A:GLU90 4.5 14.9 1.0 O A:HOH415 4.6 21.2 1.0 C A:VAL88 4.6 19.8 1.0 N A:THR91 4.7 14.2 1.0 CB A:GLU90 4.8 13.0 1.0 CG A:ASP212 4.8 16.0 1.0 N A:ASP208 4.8 14.9 1.0 C A:GLU90 4.9 16.8 1.0 N A:VAL88 4.9 16.2 1.0 OD1 A:ASP212 4.9 16.8 1.0 CA A:GLU90 4.9 16.6 1.0 CB A:THR91 5.0 16.6 1.0

N.K.Gaur, A.Kumar, S.Sunder, R.Mukhopadhyaya, R.D.Makde. Non-Specific Class-C Acidphosphatase From Sphingobium Sp. Rsms To Be Published.