Magnesium in PDB 7f7f: Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State)

All present enzymatic activity of Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State):
7.6.2.1;

The binding sites of Magnesium atom in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State) (pdb code 7f7f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State), PDB code: 7f7f:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DNF1 From Saccharomyces Cerevisiae in Yeast Lipids with Beryllium Fluoride (Resting State) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:9.6 occ:1.00 O A:THR669 2.1 17.9 1.0 OD2 A:ASP667 2.3 17.4 1.0 O A:ASP1130 3.0 21.5 1.0 CG A:ASP667 3.1 17.4 1.0 C A:THR669 3.3 17.9 1.0 CB A:ASP667 3.7 17.4 1.0 OD1 A:ASP667 3.9 17.4 1.0 CA A:GLY670 4.0 14.1 1.0 C A:ASP1130 4.1 21.5 1.0 N A:GLY670 4.1 14.1 1.0 OD1 A:ASN1133 4.2 22.8 1.0 CG2 A:THR671 4.2 13.9 1.0 CG2 A:THR669 4.2 17.9 1.0 ND2 A:ASN1133 4.3 22.8 1.0 CA A:THR669 4.4 17.9 1.0 N A:ASP1130 4.7 21.5 1.0 CG A:ASN1133 4.7 22.8 1.0 CB A:THR669 4.7 17.9 1.0 N A:THR669 4.7 17.9 1.0 N A:THR671 4.8 13.9 1.0 C A:GLY670 4.8 14.1 1.0 OG1 A:THR669 4.9 17.9 1.0 CA A:ASP1130 4.9 21.5 1.0 N A:GLY1131 4.9 19.7 1.0

J.Xu, Y.He, X.Wu, L.Li. Conformational Changes of A Phosphatidylcholine Flippase in Lipid Membranes. Cell Rep V. 38 10518 2022.
ISSN: ESSN 2211-1247
PubMed: 35294892
DOI: 10.1016/J.CELREP.2022.110518