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Magnesium in PDB 7fe0: Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis

Protein crystallography data

The structure of Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis, PDB code: 7fe0 was solved by B.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.14 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.87, 73.87, 243.62, 90, 90, 90
R / Rfree (%) 18.7 / 22

Other elements in 7fe0:

The structure of Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis also contains other interesting chemical elements:

Arsenic (As) 1 atom
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis (pdb code 7fe0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis, PDB code: 7fe0:

Magnesium binding site 1 out of 1 in 7fe0

Go back to Magnesium Binding Sites List in 7fe0
Magnesium binding site 1 out of 1 in the Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg203

b:45.5
occ:1.00
CG2 C:THR137 2.5 33.0 1.0
O B:HOH342 2.7 42.5 1.0
OG C:SER135 2.7 41.0 1.0
NE2 B:GLN184 3.0 35.2 1.0
O C:SER135 3.5 42.4 1.0
C C:SER135 3.6 42.7 1.0
N C:THR137 3.6 35.2 1.0
C C:VAL136 3.8 38.1 1.0
N C:VAL136 3.8 41.0 1.0
CA C:VAL136 3.8 39.9 1.0
CB C:SER135 3.9 41.2 1.0
CB C:THR137 3.9 35.5 1.0
CD B:GLN184 3.9 39.9 1.0
OE1 B:GLN184 3.9 39.6 1.0
OG C:SER84 4.2 39.8 1.0
NE2 B:HIS152 4.2 37.4 1.0
CE1 B:HIS152 4.2 38.5 1.0
O C:HOH307 4.3 41.4 1.0
CA C:THR137 4.3 36.4 1.0
CA C:SER135 4.3 41.0 1.0
O C:VAL136 4.4 36.2 1.0
OG B:SER186 4.5 40.9 1.0
CB C:PHE46 4.7 34.8 1.0
OG1 C:THR137 4.8 38.2 1.0
CZ3 B:TRP65 5.0 49.8 1.0

Reference:

H.J.Zhu, B.Zhang, S.H.Liu, L.Xiang, W.Wang, J.P.Zhu, R.H.Jiao, R.X.Tan, H.M.Ge. Avmm Catalyzes Macrocyclization in Alchivemycin A Biosynthesis To Be Published.
Page generated: Wed Oct 2 21:34:48 2024

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