Magnesium in PDB 7fgg: Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP

The structure of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP also contains other interesting chemical elements:

Zinc

(Zn)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP (pdb code 7fgg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP, PDB code: 7fgg:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1004 b:0.0 occ:1.00 O A:HOH1110 2.0 0.0 1.0 O1C A:MGP1003 2.2 0.0 1.0 O A:HOH1135 2.5 0.0 1.0 O A:HOH1232 2.7 0.0 1.0 O1B A:MGP1003 2.8 0.0 1.0 PC A:MGP1003 3.6 0.0 1.0 PB A:MGP1003 3.7 0.0 1.0 O3A A:MGP1003 3.9 0.0 1.0 O1A A:MGP1003 4.0 0.0 1.0 O3B A:MGP1003 4.0 0.0 1.0 CE1 A:HIS37 4.1 0.0 1.0 O A:HOH1195 4.4 0.0 1.0 NE2 A:HIS37 4.4 0.0 1.0 O2C A:MGP1003 4.5 0.0 1.0 O3C A:MGP1003 4.5 0.0 1.0 PA A:MGP1003 4.6 0.0 1.0 OG1 A:THR246 4.6 0.0 1.0 OD1 B:ASP277 4.8 0.0 1.0

Magnesium binding site 2 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1004 b:0.0 occ:1.00 O B:HOH1110 2.0 0.0 1.0 O1C B:MGP1003 2.2 0.0 1.0 O B:HOH1135 2.5 0.0 1.0 O B:HOH1232 2.7 0.0 1.0 O1B B:MGP1003 2.8 0.0 1.0 PC B:MGP1003 3.6 0.0 1.0 PB B:MGP1003 3.7 0.0 1.0 O3A B:MGP1003 3.9 0.0 1.0 O1A B:MGP1003 4.0 0.0 1.0 O3B B:MGP1003 4.0 0.0 1.0 CE1 B:HIS37 4.1 0.0 1.0 O B:HOH1195 4.4 0.0 1.0 NE2 B:HIS37 4.4 0.0 1.0 O2C B:MGP1003 4.5 0.0 1.0 O3C B:MGP1003 4.5 0.0 1.0 PA B:MGP1003 4.6 0.0 1.0 OG1 B:THR246 4.6 0.0 1.0 OD1 C:ASP277 4.8 0.0 1.0

Magnesium binding site 3 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1004 b:0.0 occ:1.00 O C:HOH1110 2.0 0.0 1.0 O1C C:MGP1003 2.2 0.0 1.0 O C:HOH1135 2.5 0.0 1.0 O C:HOH1232 2.7 0.0 1.0 O1B C:MGP1003 2.8 0.0 1.0 PC C:MGP1003 3.6 0.0 1.0 PB C:MGP1003 3.7 0.0 1.0 O3A C:MGP1003 3.9 0.0 1.0 O1A C:MGP1003 4.0 0.0 1.0 O3B C:MGP1003 4.0 0.0 1.0 CE1 C:HIS37 4.1 0.0 1.0 O C:HOH1195 4.4 0.0 1.0 NE2 C:HIS37 4.4 0.0 1.0 O2C C:MGP1003 4.5 0.0 1.0 O3C C:MGP1003 4.5 0.0 1.0 PA C:MGP1003 4.6 0.0 1.0 OG1 C:THR246 4.6 0.0 1.0 OD1 D:ASP277 4.8 0.0 1.0

Magnesium binding site 4 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1004 b:0.0 occ:1.00 O D:HOH1110 2.0 0.0 1.0 O1C D:MGP1003 2.2 0.0 1.0 O D:HOH1135 2.5 0.0 1.0 O D:HOH1232 2.7 0.0 1.0 O1B D:MGP1003 2.8 0.0 1.0 PC D:MGP1003 3.6 0.0 1.0 PB D:MGP1003 3.7 0.0 1.0 O3A D:MGP1003 3.9 0.0 1.0 O1A D:MGP1003 4.0 0.0 1.0 O3B D:MGP1003 4.0 0.0 1.0 CE1 D:HIS37 4.1 0.0 1.0 O D:HOH1195 4.4 0.0 1.0 NE2 D:HIS37 4.4 0.0 1.0 O2C D:MGP1003 4.5 0.0 1.0 O3C D:MGP1003 4.5 0.0 1.0 PA D:MGP1003 4.6 0.0 1.0 OG1 D:THR246 4.6 0.0 1.0 OD1 E:ASP277 4.8 0.0 1.0

Magnesium binding site 5 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1004 b:0.0 occ:1.00 O E:HOH1110 2.0 0.0 1.0 O1C E:MGP1003 2.2 0.0 1.0 O E:HOH1135 2.5 0.0 1.0 O E:HOH1232 2.7 0.0 1.0 O1B E:MGP1003 2.8 0.0 1.0 PC E:MGP1003 3.6 0.0 1.0 PB E:MGP1003 3.7 0.0 1.0 O3A E:MGP1003 3.9 0.0 1.0 O1A E:MGP1003 4.0 0.0 1.0 O3B E:MGP1003 4.0 0.0 1.0 CE1 E:HIS37 4.1 0.0 1.0 O E:HOH1196 4.4 0.0 1.0 NE2 E:HIS37 4.4 0.0 1.0 O2C E:MGP1003 4.5 0.0 1.0 O3C E:MGP1003 4.5 0.0 1.0 PA E:MGP1003 4.6 0.0 1.0 OG1 E:THR246 4.6 0.0 1.0 OD1 F:ASP277 4.8 0.0 1.0

Magnesium binding site 6 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1004 b:0.0 occ:1.00 O F:HOH1110 2.0 0.0 1.0 O1C F:MGP1003 2.2 0.0 1.0 O F:HOH1135 2.5 0.0 1.0 O F:HOH1232 2.7 0.0 1.0 O1B F:MGP1003 2.8 0.0 1.0 PC F:MGP1003 3.6 0.0 1.0 PB F:MGP1003 3.7 0.0 1.0 O3A F:MGP1003 3.9 0.0 1.0 O1A F:MGP1003 4.0 0.0 1.0 O3B F:MGP1003 4.0 0.0 1.0 CE1 F:HIS37 4.1 0.0 1.0 O F:HOH1195 4.4 0.0 1.0 NE2 F:HIS37 4.4 0.0 1.0 O2C F:MGP1003 4.5 0.0 1.0 O3C F:MGP1003 4.5 0.0 1.0 PA F:MGP1003 4.6 0.0 1.0 OG1 F:THR246 4.6 0.0 1.0 OD1 G:ASP277 4.8 0.0 1.0

Magnesium binding site 7 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1004 b:0.0 occ:1.00 O G:HOH1110 2.0 0.0 1.0 O1C G:MGP1003 2.2 0.0 1.0 O G:HOH1135 2.5 0.0 1.0 O G:HOH1232 2.7 0.0 1.0 O1B G:MGP1003 2.8 0.0 1.0 PC G:MGP1003 3.6 0.0 1.0 PB G:MGP1003 3.7 0.0 1.0 O3A G:MGP1003 3.9 0.0 1.0 O1A G:MGP1003 4.0 0.0 1.0 O3B G:MGP1003 4.0 0.0 1.0 CE1 G:HIS37 4.1 0.0 1.0 O G:HOH1195 4.4 0.0 1.0 NE2 G:HIS37 4.4 0.0 1.0 O2C G:MGP1003 4.5 0.0 1.0 O3C G:MGP1003 4.5 0.0 1.0 PA G:MGP1003 4.6 0.0 1.0 OG1 G:THR246 4.6 0.0 1.0 OD1 H:ASP277 4.8 0.0 1.0

Magnesium binding site 8 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1004 b:0.0 occ:1.00 O H:HOH1110 2.0 0.0 1.0 O1C H:MGP1003 2.2 0.0 1.0 O H:HOH1135 2.5 0.0 1.0 O H:HOH1232 2.7 0.0 1.0 O1B H:MGP1003 2.8 0.0 1.0 PC H:MGP1003 3.6 0.0 1.0 PB H:MGP1003 3.7 0.0 1.0 O3A H:MGP1003 3.9 0.0 1.0 O1A H:MGP1003 4.0 0.0 1.0 O3B H:MGP1003 4.0 0.0 1.0 CE1 H:HIS37 4.1 0.0 1.0 O H:HOH1195 4.4 0.0 1.0 NE2 H:HIS37 4.4 0.0 1.0 O2C H:MGP1003 4.5 0.0 1.0 O3C H:MGP1003 4.5 0.0 1.0 PA H:MGP1003 4.6 0.0 1.0 OG1 H:THR246 4.6 0.0 1.0 OD1 I:ASP277 4.8 0.0 1.0

Magnesium binding site 9 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1004 b:0.0 occ:1.00 O I:HOH1110 2.0 0.0 1.0 O1C I:MGP1003 2.2 0.0 1.0 O I:HOH1135 2.5 0.0 1.0 O I:HOH1232 2.7 0.0 1.0 O1B I:MGP1003 2.8 0.0 1.0 PC I:MGP1003 3.6 0.0 1.0 PB I:MGP1003 3.7 0.0 1.0 O3A I:MGP1003 3.9 0.0 1.0 O1A I:MGP1003 4.0 0.0 1.0 O3B I:MGP1003 4.0 0.0 1.0 CE1 I:HIS37 4.1 0.0 1.0 O I:HOH1195 4.4 0.0 1.0 NE2 I:HIS37 4.4 0.0 1.0 O2C I:MGP1003 4.5 0.0 1.0 O3C I:MGP1003 4.5 0.0 1.0 PA I:MGP1003 4.6 0.0 1.0 OG1 I:THR246 4.6 0.0 1.0 OD1 J:ASP277 4.8 0.0 1.0

Magnesium binding site 10 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GTP within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1004 b:0.0 occ:1.00 O J:HOH1110 2.0 0.0 1.0 O1C J:MGP1003 2.2 0.0 1.0 O J:HOH1135 2.5 0.0 1.0 O J:HOH1232 2.7 0.0 1.0 O1B J:MGP1003 2.8 0.0 1.0 PC J:MGP1003 3.6 0.0 1.0 PB J:MGP1003 3.7 0.0 1.0 O3A J:MGP1003 3.9 0.0 1.0 O1A J:MGP1003 4.0 0.0 1.0 O3B J:MGP1003 4.0 0.0 1.0 CE1 J:HIS37 4.1 0.0 1.0 O J:HOH1195 4.4 0.0 1.0 NE2 J:HIS37 4.4 0.0 1.0 O2C J:MGP1003 4.5 0.0 1.0 O3C J:MGP1003 4.5 0.0 1.0 PA J:MGP1003 4.6 0.0 1.0 OG1 J:THR246 4.6 0.0 1.0 OD1 K:ASP277 4.8 0.0 1.0

K.Zhang, M.C.Y.Law, T.M.Nguyen, Y.B.Tan, M.Wirawan, Y.S.Law, L.S.Jeong, D.Luo. Molecular Basis of Specific Viral Rna Recognition and 5'-End Capping By the Chikungunya Virus NSP1. Cell Rep V. 40 11133 2022.
ISSN: ESSN 2211-1247
PubMed: 35905713
DOI: 10.1016/J.CELREP.2022.111133