Magnesium in PDB 7fgi: Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au

The structure of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au also contains other interesting chemical elements:

Zinc

(Zn)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au (pdb code 7fgi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au, PDB code: 7fgi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1006 b:0.0 occ:1.00 O22 A:GTA1003 1.8 0.0 1.0 O12 A:GTA1003 2.8 0.0 1.0 P2 A:GTA1003 3.2 0.0 1.0 O13 A:GTA1003 3.5 0.0 1.0 P1 A:GTA1003 3.7 0.0 1.0 O32 A:GTA1003 3.9 0.0 1.0 O23 A:GTA1003 4.2 0.0 1.0 O21 A:GTA1003 4.2 0.0 1.0 OG1 A:THR246 4.4 0.0 1.0 O33 A:GTA1003 4.5 0.0 1.0 P3 A:GTA1003 4.5 0.0 1.0 C8C A:GTA1003 4.7 0.0 1.0 O15 A:GTA1003 4.7 0.0 1.0 N7C A:GTA1003 4.8 0.0 1.0 C5A A:GTA1003 4.8 0.0 1.0 O11 A:GTA1003 4.9 0.0 1.0

Magnesium binding site 2 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1006 b:0.0 occ:1.00 O22 B:GTA1003 1.8 0.0 1.0 O12 B:GTA1003 2.8 0.0 1.0 P2 B:GTA1003 3.2 0.0 1.0 O13 B:GTA1003 3.5 0.0 1.0 P1 B:GTA1003 3.7 0.0 1.0 O32 B:GTA1003 3.9 0.0 1.0 O23 B:GTA1003 4.2 0.0 1.0 O21 B:GTA1003 4.2 0.0 1.0 OG1 B:THR246 4.4 0.0 1.0 O33 B:GTA1003 4.5 0.0 1.0 P3 B:GTA1003 4.5 0.0 1.0 C8C B:GTA1003 4.7 0.0 1.0 O15 B:GTA1003 4.7 0.0 1.0 N7C B:GTA1003 4.8 0.0 1.0 C5A B:GTA1003 4.8 0.0 1.0 O11 B:GTA1003 4.9 0.0 1.0

Magnesium binding site 3 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1006 b:0.0 occ:1.00 O22 C:GTA1003 1.8 0.0 1.0 O12 C:GTA1003 2.8 0.0 1.0 P2 C:GTA1003 3.2 0.0 1.0 O13 C:GTA1003 3.5 0.0 1.0 P1 C:GTA1003 3.7 0.0 1.0 O32 C:GTA1003 3.9 0.0 1.0 O23 C:GTA1003 4.2 0.0 1.0 O21 C:GTA1003 4.2 0.0 1.0 OG1 C:THR246 4.4 0.0 1.0 O33 C:GTA1003 4.5 0.0 1.0 P3 C:GTA1003 4.5 0.0 1.0 C8C C:GTA1003 4.7 0.0 1.0 O15 C:GTA1003 4.7 0.0 1.0 N7C C:GTA1003 4.8 0.0 1.0 C5A C:GTA1003 4.8 0.0 1.0 O11 C:GTA1003 4.9 0.0 1.0

Magnesium binding site 4 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1006 b:0.0 occ:1.00 O22 D:GTA1003 1.8 0.0 1.0 O12 D:GTA1003 2.8 0.0 1.0 P2 D:GTA1003 3.2 0.0 1.0 O13 D:GTA1003 3.5 0.0 1.0 P1 D:GTA1003 3.7 0.0 1.0 O32 D:GTA1003 3.9 0.0 1.0 O23 D:GTA1003 4.2 0.0 1.0 O21 D:GTA1003 4.2 0.0 1.0 OG1 D:THR246 4.4 0.0 1.0 O33 D:GTA1003 4.5 0.0 1.0 P3 D:GTA1003 4.5 0.0 1.0 C8C D:GTA1003 4.7 0.0 1.0 O15 D:GTA1003 4.7 0.0 1.0 N7C D:GTA1003 4.8 0.0 1.0 C5A D:GTA1003 4.8 0.0 1.0 O11 D:GTA1003 4.9 0.0 1.0

Magnesium binding site 5 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1006 b:0.0 occ:1.00 O22 E:GTA1003 1.8 0.0 1.0 O12 E:GTA1003 2.8 0.0 1.0 P2 E:GTA1003 3.2 0.0 1.0 O13 E:GTA1003 3.5 0.0 1.0 P1 E:GTA1003 3.7 0.0 1.0 O32 E:GTA1003 3.9 0.0 1.0 O23 E:GTA1003 4.2 0.0 1.0 O21 E:GTA1003 4.2 0.0 1.0 OG1 E:THR246 4.4 0.0 1.0 O33 E:GTA1003 4.5 0.0 1.0 P3 E:GTA1003 4.5 0.0 1.0 C8C E:GTA1003 4.7 0.0 1.0 O15 E:GTA1003 4.7 0.0 1.0 N7C E:GTA1003 4.8 0.0 1.0 C5A E:GTA1003 4.8 0.0 1.0 O11 E:GTA1003 4.9 0.0 1.0

Magnesium binding site 6 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg1006 b:0.0 occ:1.00 O22 F:GTA1003 1.8 0.0 1.0 O12 F:GTA1003 2.8 0.0 1.0 P2 F:GTA1003 3.2 0.0 1.0 O13 F:GTA1003 3.5 0.0 1.0 P1 F:GTA1003 3.7 0.0 1.0 O32 F:GTA1003 3.9 0.0 1.0 O23 F:GTA1003 4.2 0.0 1.0 O21 F:GTA1003 4.2 0.0 1.0 OG1 F:THR246 4.4 0.0 1.0 O33 F:GTA1003 4.5 0.0 1.0 P3 F:GTA1003 4.5 0.0 1.0 C8C F:GTA1003 4.7 0.0 1.0 O15 F:GTA1003 4.7 0.0 1.0 N7C F:GTA1003 4.8 0.0 1.0 C5A F:GTA1003 4.8 0.0 1.0 O11 F:GTA1003 4.9 0.0 1.0

Magnesium binding site 7 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1006 b:0.0 occ:1.00 O22 G:GTA1003 1.8 0.0 1.0 O12 G:GTA1003 2.8 0.0 1.0 P2 G:GTA1003 3.2 0.0 1.0 O13 G:GTA1003 3.5 0.0 1.0 P1 G:GTA1003 3.7 0.0 1.0 O32 G:GTA1003 3.9 0.0 1.0 O23 G:GTA1003 4.2 0.0 1.0 O21 G:GTA1003 4.2 0.0 1.0 OG1 G:THR246 4.4 0.0 1.0 O33 G:GTA1003 4.5 0.0 1.0 P3 G:GTA1003 4.5 0.0 1.0 C8C G:GTA1003 4.7 0.0 1.0 O15 G:GTA1003 4.7 0.0 1.0 N7C G:GTA1003 4.8 0.0 1.0 C5A G:GTA1003 4.8 0.0 1.0 O11 G:GTA1003 4.9 0.0 1.0

Magnesium binding site 8 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1006 b:0.0 occ:1.00 O22 H:GTA1003 1.8 0.0 1.0 O12 H:GTA1003 2.8 0.0 1.0 P2 H:GTA1003 3.2 0.0 1.0 O13 H:GTA1003 3.5 0.0 1.0 P1 H:GTA1003 3.7 0.0 1.0 O32 H:GTA1003 3.9 0.0 1.0 O23 H:GTA1003 4.2 0.0 1.0 O21 H:GTA1003 4.2 0.0 1.0 OG1 H:THR246 4.4 0.0 1.0 O33 H:GTA1003 4.5 0.0 1.0 P3 H:GTA1003 4.5 0.0 1.0 C8C H:GTA1003 4.7 0.0 1.0 O15 H:GTA1003 4.7 0.0 1.0 N7C H:GTA1003 4.8 0.0 1.0 C5A H:GTA1003 4.8 0.0 1.0 O11 H:GTA1003 4.9 0.0 1.0

Magnesium binding site 9 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1006 b:0.0 occ:1.00 O22 I:GTA1003 1.8 0.0 1.0 O12 I:GTA1003 2.8 0.0 1.0 P2 I:GTA1003 3.2 0.0 1.0 O13 I:GTA1003 3.5 0.0 1.0 P1 I:GTA1003 3.7 0.0 1.0 O32 I:GTA1003 3.9 0.0 1.0 O23 I:GTA1003 4.2 0.0 1.0 O21 I:GTA1003 4.2 0.0 1.0 OG1 I:THR246 4.4 0.0 1.0 O33 I:GTA1003 4.5 0.0 1.0 P3 I:GTA1003 4.5 0.0 1.0 C8C I:GTA1003 4.7 0.0 1.0 O15 I:GTA1003 4.7 0.0 1.0 N7C I:GTA1003 4.8 0.0 1.0 C5A I:GTA1003 4.8 0.0 1.0 O11 I:GTA1003 4.9 0.0 1.0

Magnesium binding site 10 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with M7GPPP-Au within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1006 b:0.0 occ:1.00 O22 J:GTA1003 1.8 0.0 1.0 O12 J:GTA1003 2.8 0.0 1.0 P2 J:GTA1003 3.2 0.0 1.0 O13 J:GTA1003 3.5 0.0 1.0 P1 J:GTA1003 3.7 0.0 1.0 O32 J:GTA1003 3.9 0.0 1.0 O23 J:GTA1003 4.2 0.0 1.0 O21 J:GTA1003 4.2 0.0 1.0 OG1 J:THR246 4.4 0.0 1.0 O33 J:GTA1003 4.5 0.0 1.0 P3 J:GTA1003 4.5 0.0 1.0 C8C J:GTA1003 4.7 0.0 1.0 O15 J:GTA1003 4.7 0.0 1.0 N7C J:GTA1003 4.8 0.0 1.0 C5A J:GTA1003 4.8 0.0 1.0 O11 J:GTA1003 4.9 0.0 1.0

K.Zhang, M.C.Y.Law, T.M.Nguyen, Y.B.Tan, M.Wirawan, Y.S.Law, L.S.Jeong, D.Luo. Molecular Basis of Specific Viral Rna Recognition and 5'-End Capping By the Chikungunya Virus NSP1. Cell Rep V. 40 11133 2022.
ISSN: ESSN 2211-1247
PubMed: 35905713
DOI: 10.1016/J.CELREP.2022.111133