Magnesium in PDB 7fjp: Cryo Em Structure of Lysosomal Atpase

The binding sites of Magnesium atom in the Cryo Em Structure of Lysosomal Atpase (pdb code 7fjp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo Em Structure of Lysosomal Atpase, PDB code: 7fjp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo Em Structure of Lysosomal Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo Em Structure of Lysosomal Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1203 b:16.1 occ:1.00 O4 B:PO41201 2.6 27.2 1.0 O B:THR515 2.9 19.2 1.0 O B:ASP878 3.1 28.3 1.0 O3 B:PO41201 3.1 27.2 1.0 OD2 B:ASP513 3.1 18.1 1.0 P B:PO41201 3.4 27.2 1.0 CB B:ASP878 3.8 28.3 1.0 C B:ASP878 3.8 28.3 1.0 O1 B:PO41201 4.0 27.2 1.0 C B:THR515 4.0 19.2 1.0 CG B:ASP513 4.2 18.1 1.0 OE2 B:GLU348 4.2 41.5 1.0 CG B:ASP878 4.3 28.3 1.0 CA B:ASP878 4.4 28.3 1.0 OD2 B:ASP878 4.4 28.3 1.0 OD1 B:ASP513 4.5 18.1 1.0 O2B B:ADP1202 4.6 32.2 1.0 O2 B:PO41201 4.7 27.2 1.0 N B:GLY879 4.7 29.3 1.0 CA B:GLY516 4.7 21.0 1.0 OG1 B:THR517 4.8 17.8 1.0 OD1 B:ASN881 4.8 23.6 1.0 N B:ASP878 4.8 28.3 1.0 N B:GLY516 4.8 21.0 1.0 MG B:MG1204 4.9 30.0 1.0 CA B:GLY879 4.9 29.3 1.0 OD2 B:ASP882 4.9 23.0 1.0 CB B:THR515 5.0 19.2 1.0 OD1 B:ASP878 5.0 28.3 1.0 CA B:THR515 5.0 19.2 1.0

Magnesium binding site 2 out of 2 in the Cryo Em Structure of Lysosomal Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo Em Structure of Lysosomal Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1204 b:30.0 occ:1.00 O2B B:ADP1202 2.0 32.2 1.0 O1A B:ADP1202 3.0 32.2 1.0 PB B:ADP1202 3.2 32.2 1.0 O3A B:ADP1202 3.6 32.2 1.0 O1B B:ADP1202 3.7 32.2 1.0 PA B:ADP1202 3.9 32.2 1.0 O4 B:PO41201 4.1 27.2 1.0 NH2 B:ARG686 4.1 31.1 1.0 O1 B:PO41201 4.3 27.2 1.0 O3B B:ADP1202 4.5 32.2 1.0 C8 B:ADP1202 4.6 32.2 1.0 N7 B:ADP1202 4.7 32.2 1.0 P B:PO41201 4.9 27.2 1.0 O5' B:ADP1202 4.9 32.2 1.0 CG2 B:THR515 4.9 19.2 1.0 MG B:MG1203 4.9 16.1 1.0

X.Chen, M.Zhou, S.Zhang, J.Yin, P.Zhang, X.Xuan, P.Wang, Z.Liu, B.Zhou, M.Yang. Cryo-Em Structures and Transport Mechanism of Human P5B Type Atpase ATP13A2. Cell Discov V. 7 106 2021.
ISSN: ESSN 2056-5968
PubMed: 34728622
DOI: 10.1038/S41421-021-00334-6