Magnesium in PDB 7jga: Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3

Enzymatic activity of Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3

Other elements in 7jga:

Magnesium Binding Sites:

Magnesium binding site 1 out of 4 in 7jga

Magnesium Binding Sites List in 7jga

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:75.4 occ:1.00 O1B A:ATP600 1.8 78.3 1.0 O1G A:ATP600 2.0 78.3 1.0 OG1 A:THR179 2.0 75.9 1.0 PG A:ATP600 2.9 78.3 1.0 PB A:ATP600 2.9 78.3 1.0 O3G A:ATP600 3.0 78.3 1.0 CB A:THR179 3.2 75.9 1.0 O3B A:ATP600 3.4 78.3 1.0 O2B A:ATP600 3.7 78.3 1.0 NE2 A:GLN211 3.8 74.4 1.0 CG2 A:THR179 3.9 75.9 1.0 O1A A:ATP600 4.0 78.3 1.0 OD2 A:ASP272 4.0 74.1 1.0 OD1 A:ASP272 4.2 74.1 1.0 O3A A:ATP600 4.2 78.3 1.0 O2G A:ATP600 4.3 78.3 1.0 CA A:THR179 4.3 75.9 1.0 N A:THR179 4.4 75.9 1.0 CG A:ASP272 4.5 74.1 1.0 PA A:ATP600 4.6 78.3 1.0 CD A:GLN211 4.8 74.4 1.0 OE1 A:GLN211 4.8 74.4 1.0

Magnesium binding site 2 out of 4 in 7jga

Magnesium Binding Sites List in 7jga

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:75.1 occ:1.00 O2B B:ATP600 2.0 82.2 1.0 O3G B:ATP600 2.0 82.2 1.0 OG1 B:THR179 2.1 75.3 1.0 OD2 B:ASP272 3.1 71.7 1.0 CB B:THR179 3.2 75.3 1.0 PB B:ATP600 3.2 82.2 1.0 PG B:ATP600 3.3 82.2 1.0 NE2 B:GLN211 3.4 73.7 1.0 O1B B:ATP600 3.7 82.2 1.0 O3B B:ATP600 3.8 82.2 1.0 OD1 B:ASP272 3.8 71.7 1.0 CG B:ASP272 3.9 71.7 1.0 O2G B:ATP600 3.9 82.2 1.0 CG2 B:THR179 4.0 75.3 1.0 CD B:GLN211 4.1 73.7 1.0 O1A B:ATP600 4.1 82.2 1.0 N B:THR179 4.3 75.3 1.0 CA B:THR179 4.3 75.3 1.0 O3A B:ATP600 4.5 82.2 1.0 O1G B:ATP600 4.5 82.2 1.0 OE1 B:GLN211 4.6 73.7 1.0 PA B:ATP600 4.8 82.2 1.0 CG2 B:THR215 4.8 74.1 1.0 CG B:GLN211 4.9 73.7 1.0

Magnesium binding site 3 out of 4 in 7jga

Magnesium Binding Sites List in 7jga

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:79.5 occ:1.00 O2B C:ATP600 1.8 76.4 1.0 O1B C:ATP600 2.1 76.4 1.0 OG1 C:THR179 2.1 73.3 1.0 O1G C:ATP600 2.1 76.4 1.0 PB C:ATP600 2.1 76.4 1.0 O3B C:ATP600 3.0 76.4 1.0 PG C:ATP600 3.1 76.4 1.0 CB C:THR179 3.4 73.3 1.0 O3A C:ATP600 3.6 76.4 1.0 O2G C:ATP600 3.8 76.4 1.0 O1A C:ATP600 3.9 76.4 1.0 OD2 C:ASP272 4.0 72.1 1.0 OD1 C:ASP272 4.1 72.1 1.0 N C:THR179 4.2 73.3 1.0 CG2 C:THR179 4.2 73.3 1.0 PA C:ATP600 4.3 76.4 1.0 NE2 C:GLN211 4.3 72.4 1.0 O3G C:ATP600 4.3 76.4 1.0 CA C:THR179 4.4 73.3 1.0 CG C:ASP272 4.5 72.1 1.0 NZ C:LYS178 4.6 73.9 1.0 O2A C:ATP600 4.6 76.4 1.0 CE C:LYS178 4.8 73.9 1.0 OD1 C:ASP273 4.9 73.5 1.0 OD2 C:ASP273 4.9 73.5 1.0

Magnesium binding site 4 out of 4 in 7jga

Magnesium Binding Sites List in 7jga

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Bedaquiline-Saturated Mycobacterium Smegmatis Atp Synthase Rotational State 3 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:75.4 occ:1.00 OG1 E:THR167 2.1 76.8 1.0 OE2 E:GLU192 2.1 76.0 1.0 O2B E:ADP600 2.2 77.4 1.0 O3B E:ADP600 2.5 77.4 1.0 PB E:ADP600 2.8 77.4 1.0 CD E:GLU192 3.2 76.0 1.0 CB E:THR167 3.4 76.8 1.0 O3A E:ADP600 3.9 77.4 1.0 NH1 E:ARG193 3.9 74.5 1.0 N E:THR167 4.0 76.8 1.0 OE1 E:GLU192 4.0 76.0 1.0 CG E:GLU192 4.1 76.0 1.0 O1B E:ADP600 4.1 77.4 1.0 CA E:THR167 4.3 76.8 1.0 O2A E:ADP600 4.3 77.4 1.0 NZ E:LYS166 4.3 75.2 1.0 CE E:LYS166 4.3 75.2 1.0 CG2 E:THR167 4.4 76.8 1.0 PA E:ADP600 4.5 77.4 1.0 CB E:LYS166 4.7 75.2 1.0 O1A E:ADP600 4.8 77.4 1.0 CZ E:ARG193 4.8 74.5 1.0 C E:LYS166 5.0 75.2 1.0

Reference: