Magnesium in PDB 7jh9: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction, PDB code: 7jh9 was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.28 / 3.09
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.554, 68.554, 55.361, 90, 90, 120
R / Rfree (%)	23.8 / 25.8

The binding sites of Magnesium atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction (pdb code 7jh9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction, PDB code: 7jh9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:72.5 occ:1.00 O6 B:DG14 3.3 67.3 1.0 O6 B:DG13 3.8 67.6 1.0 H41 C:DC3 3.8 58.7 1.0 H42 C:DC3 3.8 58.7 1.0 N7 B:DG13 4.1 72.0 1.0 N4 C:DC3 4.2 48.5 1.0 C6 B:DG13 4.5 65.1 1.0 C6 B:DG14 4.6 63.3 1.0 C5 B:DG13 4.6 68.0 1.0

Magnesium binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J22 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:42.9 occ:1.00 N7 D:DG11 3.6 48.3 1.0 N7 D:DG10 4.1 50.8 1.0 OP2 D:DG10 4.2 59.8 1.0 O6 D:DG11 4.3 66.1 1.0 C8 D:DG11 4.6 66.6 1.0 H8 D:DG11 4.6 80.4 1.0 C5 D:DG11 4.6 61.3 1.0 H5' D:DG9 4.7 61.7 1.0 C8 D:DG10 4.7 51.3 1.0 OP1 D:DG9 4.7 53.7 1.0 H8 D:DG10 4.7 62.0 1.0 C5 D:DG10 4.8 54.0 1.0 H5'' D:DG9 4.8 61.7 1.0 C6 D:DG11 4.8 69.2 1.0 O6 D:DG10 4.9 51.6 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.