Magnesium in PDB 7jk5: Structure of Drosophila Orc Bound to Dna

The binding sites of Magnesium atom in the Structure of Drosophila Orc Bound to Dna (pdb code 7jk5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Drosophila Orc Bound to Dna, PDB code: 7jk5:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of Drosophila Orc Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Drosophila Orc Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:0.4 occ:1.00 O1G D:ATP901 2.0 0.3 1.0 O2B D:ATP901 2.1 0.3 1.0 O1B D:ATP901 2.2 0.3 1.0 OG1 D:THR63 2.2 0.0 1.0 PB D:ATP901 2.4 0.3 1.0 OE2 D:GLU147 2.5 0.7 1.0 PG D:ATP901 3.1 0.3 1.0 CB D:THR63 3.2 0.0 1.0 O3B D:ATP901 3.2 0.3 1.0 O3G D:ATP901 3.7 0.3 1.0 CD D:GLU147 3.8 0.7 1.0 O3A D:ATP901 3.9 0.3 1.0 NH2 E:ARG144 4.0 0.0 1.0 O2A D:ATP901 4.0 0.3 1.0 N D:THR63 4.0 0.0 1.0 CG2 D:THR63 4.2 0.0 1.0 CA D:THR63 4.2 0.0 1.0 OE2 E:GLU147 4.3 0.4 1.0 O2G D:ATP901 4.4 0.3 1.0 PA D:ATP901 4.4 0.3 1.0 OE1 D:GLU147 4.5 0.7 1.0 CG D:GLU147 4.8 0.7 1.0 O1A D:ATP901 4.8 0.3 1.0 NH1 E:ARG144 4.9 0.0 1.0 CZ E:ARG144 4.9 0.0 1.0 CB D:LYS62 4.9 0.0 1.0

Magnesium binding site 2 out of 3 in the Structure of Drosophila Orc Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Drosophila Orc Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg902 b:0.9 occ:1.00 O2B E:ATP901 2.1 0.3 1.0 O3G E:ATP901 2.1 0.3 1.0 O1G E:ATP901 2.6 0.3 1.0 PG E:ATP901 2.8 0.3 1.0 OG1 E:THR48 3.1 0.0 1.0 PB E:ATP901 3.2 0.3 1.0 O3B E:ATP901 3.4 0.3 1.0 CB E:THR48 3.9 0.0 1.0 OD2 E:ASP126 4.0 0.9 1.0 O1A E:ATP901 4.1 0.3 1.0 OD1 E:ASP126 4.1 0.9 1.0 O1B E:ATP901 4.2 0.3 1.0 O2G E:ATP901 4.2 0.3 1.0 O3A E:ATP901 4.4 0.3 1.0 CG E:ASP126 4.4 0.9 1.0 CG2 E:THR48 4.6 0.0 1.0 PA E:ATP901 4.6 0.3 1.0 NZ E:LYS47 4.7 0.2 1.0 O2A E:ATP901 4.8 0.3 1.0 CE C:LYS260 4.9 0.2 1.0 ND2 E:ASN127 5.0 0.7 1.0

Magnesium binding site 3 out of 3 in the Structure of Drosophila Orc Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Drosophila Orc Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:0.4 occ:1.00 OG1 A:THR605 2.1 0.7 1.0 O3G A:ATP1001 2.1 0.6 1.0 O2B A:ATP1001 2.6 0.6 1.0 CB A:THR605 2.9 0.7 1.0 O1A A:ATP1001 3.0 0.6 1.0 NH2 D:ARG197 3.3 0.5 1.0 PG A:ATP1001 3.4 0.6 1.0 CG2 A:THR605 3.7 0.7 1.0 PB A:ATP1001 3.7 0.6 1.0 O3B A:ATP1001 3.8 0.6 1.0 O1G A:ATP1001 3.8 0.6 1.0 OE2 A:GLU685 4.0 0.2 1.0 PA A:ATP1001 4.1 0.6 1.0 CA A:THR605 4.2 0.7 1.0 O3A A:ATP1001 4.2 0.6 1.0 N A:THR605 4.3 0.7 1.0 CZ D:ARG197 4.4 0.5 1.0 O2G A:ATP1001 4.6 0.6 1.0 O2A A:ATP1001 4.7 0.6 1.0 NH1 D:ARG197 4.7 0.5 1.0 OD1 A:ASP684 4.8 0.8 1.0 NH2 A:ARG784 4.9 0.2 1.0

J.M.Schmidt, F.Bleichert. Structural Mechanism For Replication Origin Binding and Remodeling By A Metazoan Origin Recognition Complex and Its Co-Loader CDC6. Nat Commun V. 11 4263 2020.
ISSN: ESSN 2041-1723
PubMed: 32848132
DOI: 10.1038/S41467-020-18067-7