Atomistry » Magnesium » PDB 7jk3-7jrz » 7jkr
Atomistry »
  Magnesium »
    PDB 7jk3-7jrz »
      7jkr »

Magnesium in PDB 7jkr: Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site

Enzymatic activity of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site

All present enzymatic activity of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site:
6.2.1.4; 6.2.1.5;

Protein crystallography data

The structure of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site, PDB code: 7jkr was solved by J.Huang, M.E.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.02 / 2.64
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.328, 99.328, 134.029, 90, 90, 120
R / Rfree (%) 24.1 / 29.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site (pdb code 7jkr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site, PDB code: 7jkr:

Magnesium binding site 1 out of 1 in 7jkr

Go back to Magnesium Binding Sites List in 7jkr
Magnesium binding site 1 out of 1 in the Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gtp-Specific Succinyl-Coa Synthetase Complexed with Mg-Gmppnp, Phosphohistidine Loop Pointing Towards Nucleotide Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:96.0
occ:1.00
 O B:ASN206 2.0 92.0 1.0
O2G B:GNP601 2.1 96.5 1.0
O3A B:GNP601 2.2 102.5 1.0
OD2 B:ASP220 2.4 96.2 1.0
O2A B:GNP601 2.5 97.4 1.0
HOG2 B:GNP601 2.7 116.3 1.0
HB2 B:ASP220 2.7 111.2 1.0
HB3 B:ASP220 2.9 111.2 1.0
PA B:GNP601 2.9 98.2 1.0
CB B:ASP220 3.1 92.3 1.0
CG B:ASP220 3.1 93.7 1.0
C B:ASN206 3.2 91.5 1.0
HOA2 B:GNP601 3.3 117.4 1.0
PG B:GNP601 3.3 97.5 1.0
PB B:GNP601 3.4 106.3 1.0
N3B B:GNP601 3.4 108.2 1.0
HD22 B:ASN206 3.4 121.6 1.0
H5'1 B:GNP601 3.5 123.8 1.0
HD3 B:PRO207 3.5 111.6 1.0
HB3 B:ASN206 3.6 111.9 1.0
HZ3 B:LYS222 3.8 122.6 1.0
HD2 B:PRO207 3.9 111.6 1.0
O1A B:GNP601 3.9 103.2 1.0
CD B:PRO207 4.0 92.5 1.0
ND2 B:ASN206 4.0 100.9 1.0
N B:PRO207 4.0 88.4 1.0
O2B B:GNP601 4.1 104.7 1.0
HNB3 B:GNP601 4.1 130.4 1.0
HE2 B:LYS222 4.1 125.5 1.0
HH11 B:ARG54 4.1 121.5 1.0
O5' B:GNP601 4.1 103.0 1.0
HZ2 B:LYS222 4.2 122.6 1.0
CB B:ASN206 4.2 92.8 1.0
H B:ASN206 4.3 99.4 1.0
CA B:ASN206 4.3 90.2 1.0
C5' B:GNP601 4.3 102.7 1.0
O1G B:GNP601 4.3 101.9 1.0
OD1 B:ASP220 4.3 93.6 1.0
O3G B:GNP601 4.3 110.7 1.0
NZ B:LYS222 4.4 101.8 1.0
HD21 B:ASN206 4.5 121.6 1.0
CG B:ASN206 4.5 96.4 1.0
H3' B:GNP601 4.6 115.7 1.0
CA B:ASP220 4.6 94.7 1.0
O1B B:GNP601 4.6 111.1 1.0
HOB2 B:GNP601 4.6 126.1 1.0
N B:ASN206 4.7 82.4 1.0
CE B:LYS222 4.7 104.1 1.0
H5'2 B:GNP601 4.8 123.8 1.0
HG12 B:VAL138 4.9 125.3 1.0
NH1 B:ARG54 4.9 100.8 1.0

Reference:

J.Huang, M.E.Fraser. Second Distinct Conformation of the Phosphohistidine Loop in Succinyl-Coa Synthetase Acta Crystallogr.,Sect.D V. 77 357 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321000334
Page generated: Wed Oct 2 21:55:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy