Magnesium in PDB 7jlh: Structure of Centromeric Satellite III Non-Canonical Duplex

The structure of Structure of Centromeric Satellite III Non-Canonical Duplex, PDB code: 7jlh was solved by L.A.Yatsunyk, E.V.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.54 / 1.57
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.522, 40.217, 55.379, 90, 90, 90
R / Rfree (%)	22.1 / 25.5

The binding sites of Magnesium atom in the Structure of Centromeric Satellite III Non-Canonical Duplex (pdb code 7jlh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Centromeric Satellite III Non-Canonical Duplex, PDB code: 7jlh:

Magnesium binding site 1 out of 1 in the Structure of Centromeric Satellite III Non-Canonical Duplex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Centromeric Satellite III Non-Canonical Duplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:29.1 occ:1.00 O D:HOH111 1.9 31.9 1.0 O C:HOH109 2.1 29.7 1.0 O B:HOH212 2.1 29.1 1.0 O B:HOH204 2.1 31.7 1.0 O B:HOH205 2.1 31.2 1.0 O B:HOH210 2.2 29.0 1.0 N1 C:DA1 4.2 31.2 1.0 OP1 D:DG5 4.2 35.9 1.0 O C:HOH120 4.2 32.4 1.0 O D:HOH103 4.3 34.7 1.0 C2 C:DA1 4.3 32.1 1.0 O D:HOH106 4.3 34.5 1.0 OP1 B:DA1 4.3 35.0 1.0 O A:ACT101 4.3 34.6 1.0 OP2 B:DA1 4.4 36.0 1.0 O B:HOH207 4.4 28.3 1.0 N7 B:DA2 4.4 29.7 1.0 N6 B:DA2 4.5 28.9 1.0 O C:HOH111 4.6 33.7 1.0 CH3 A:ACT101 4.7 37.4 1.0 C5' D:DG4 4.8 25.8 1.0 P B:DA1 4.8 35.5 1.0 O B:HOH209 4.9 41.9 1.0 O D:HOH118 5.0 34.6 1.0

L.A.Yatsunyk, E.V.Chen, H.Lee. Crystal Structure of 4-Repeat Satellite III Sequence with Non-Canonical Base Interactions To Be Published.