Magnesium in PDB 7jm7: Structure of Human Clc-7/OSTM1 Complex

The structure of Structure of Human Clc-7/OSTM1 Complex also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

The binding sites of Magnesium atom in the Structure of Human Clc-7/OSTM1 Complex (pdb code 7jm7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Human Clc-7/OSTM1 Complex, PDB code: 7jm7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Human Clc-7/OSTM1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Clc-7/OSTM1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:31.4 occ:1.00 O1B A:ATP901 2.0 40.0 1.0 OE2 A:GLU95 2.4 37.3 1.0 CD A:GLU95 2.9 37.3 1.0 OE1 A:GLU95 3.1 37.3 1.0 O2A A:ATP901 3.2 40.0 1.0 PB A:ATP901 3.4 40.0 1.0 O1G A:ATP901 3.5 40.0 1.0 HA A:GLU95 3.5 37.3 1.0 HD21 A:ASN659 3.6 43.4 1.0 PA A:ATP901 3.9 40.0 1.0 HD22 A:ASN659 4.0 43.4 1.0 O3B A:ATP901 4.1 40.0 1.0 CG A:GLU95 4.1 37.3 1.0 ND2 A:ASN659 4.1 43.4 1.0 HG2 A:GLU95 4.1 37.3 1.0 HZ3 A:LYS785 4.1 38.8 1.0 O1A A:ATP901 4.1 40.0 1.0 HH11 A:ARG767 4.2 35.9 1.0 O A:LEU92 4.2 41.7 1.0 O3A A:ATP901 4.2 40.0 1.0 O A:ASN657 4.3 46.9 1.0 HZ2 A:LYS785 4.3 38.8 1.0 PG A:ATP901 4.4 40.0 1.0 CA A:GLU95 4.4 37.3 1.0 O2B A:ATP901 4.5 40.0 1.0 HB3 A:GLU95 4.6 37.3 1.0 CB A:GLU95 4.6 37.3 1.0 NZ A:LYS785 4.7 38.8 1.0 O A:TYR94 4.7 37.0 1.0 O3G A:ATP901 4.8 40.0 1.0 HG3 A:GLU95 4.8 37.3 1.0 HE2 A:LYS785 4.9 38.8 1.0 NH1 A:ARG767 4.9 35.9 1.0

Magnesium binding site 2 out of 2 in the Structure of Human Clc-7/OSTM1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Human Clc-7/OSTM1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg902 b:33.0 occ:1.00 O1B C:ATP901 2.0 40.9 1.0 OE2 C:GLU95 2.4 37.5 1.0 CD C:GLU95 2.9 37.5 1.0 OE1 C:GLU95 3.1 37.5 1.0 O2A C:ATP901 3.2 40.9 1.0 PB C:ATP901 3.4 40.9 1.0 O1G C:ATP901 3.5 40.9 1.0 HA C:GLU95 3.5 37.5 1.0 HD21 C:ASN659 3.6 44.1 1.0 PA C:ATP901 3.9 40.9 1.0 HD22 C:ASN659 4.0 44.1 1.0 O3B C:ATP901 4.1 40.9 1.0 CG C:GLU95 4.1 37.5 1.0 ND2 C:ASN659 4.1 44.1 1.0 HG2 C:GLU95 4.1 37.5 1.0 HZ3 C:LYS785 4.1 39.3 1.0 O1A C:ATP901 4.1 40.9 1.0 HH11 C:ARG767 4.2 36.5 1.0 O C:LEU92 4.2 41.5 1.0 O3A C:ATP901 4.2 40.9 1.0 O C:ASN657 4.3 47.6 1.0 HZ2 C:LYS785 4.3 39.3 1.0 PG C:ATP901 4.4 40.9 1.0 CA C:GLU95 4.4 37.5 1.0 O2B C:ATP901 4.5 40.9 1.0 HB3 C:GLU95 4.6 37.5 1.0 CB C:GLU95 4.6 37.5 1.0 NZ C:LYS785 4.7 39.3 1.0 O C:TYR94 4.7 36.7 1.0 O3G C:ATP901 4.8 40.9 1.0 HG3 C:GLU95 4.8 37.5 1.0 NH1 C:ARG767 4.9 36.5 1.0 HE2 C:LYS785 4.9 39.3 1.0

M.Schrecker, J.Korobenko, R.K.Hite. Cryo-Em Structure of the Lysosomal Chloride-Proton Exchanger Clc-7 in Complex with OSTM1. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32749217
DOI: 10.7554/ELIFE.59555