Magnesium in PDB 7jn3: Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048

Enzymatic activity of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048

Other elements in 7jn3:

Magnesium Binding Sites:

Magnesium binding site 1 out of 4 in 7jn3

Magnesium Binding Sites List in 7jn3

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:39.9 occ:1.00 OAG A:ZZX302 2.0 53.6 1.0 OE2 A:GLU157 2.0 36.7 1.0 OD1 A:ASP64 2.0 34.7 1.0 OD2 A:ASP64 2.2 34.7 1.0 CG A:ASP64 2.3 34.7 1.0 OE1 A:GLU157 2.5 36.7 1.0 CD A:GLU157 2.6 36.7 1.0 OAF A:ZZX302 2.7 53.6 1.0 CAW A:ZZX302 2.9 53.6 1.0 MG A:MG304 3.3 37.0 1.0 CBA A:ZZX302 3.3 53.6 1.0 CAZ A:ZZX302 3.3 53.6 1.0 CB A:ASP64 3.6 34.7 1.0 CAY A:ZZX302 3.7 53.6 1.0 CG A:GLU157 4.0 36.7 1.0 OD1 A:ASP121 4.2 46.6 1.0 CB A:SER150 4.2 51.5 1.0 OAE A:ZZX302 4.3 53.6 1.0 CAS A:ZZX302 4.4 53.6 1.0 NBE A:ZZX302 4.5 53.6 1.0 CBB A:ZZX302 4.5 53.6 1.0 CA A:ASP64 4.6 34.7 1.0 OG A:SER150 4.6 51.5 1.0 NBF A:ZZX302 4.7 53.6 1.0 N A:PHE65 4.8 36.4 1.0 CG A:ASP121 5.0 46.6 1.0 CB A:GLU157 5.0 36.7 1.0 O A:PHE65 5.0 36.4 1.0

Magnesium binding site 2 out of 4 in 7jn3

Magnesium Binding Sites List in 7jn3

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:37.0 occ:1.00 OD1 A:ASP64 2.2 34.7 1.0 OD1 A:ASP121 2.4 46.6 1.0 OAE A:ZZX302 2.5 53.6 1.0 OD2 A:ASP121 2.6 46.6 1.0 CG A:ASP121 2.7 46.6 1.0 CAS A:ZZX302 2.9 53.6 1.0 OAG A:ZZX302 3.0 53.6 1.0 MG A:MG303 3.3 39.9 1.0 CAY A:ZZX302 3.4 53.6 1.0 CG A:ASP64 3.4 34.7 1.0 CAW A:ZZX302 3.6 53.6 1.0 NBD A:ZZX302 3.7 53.6 1.0 CB A:ASP121 4.1 46.6 1.0 CAM A:ZZX302 4.1 53.6 1.0 CA A:ASP64 4.2 34.7 1.0 N A:PHE65 4.2 36.4 1.0 OD2 A:ASP64 4.3 34.7 1.0 CB A:ASP64 4.3 34.7 1.0 CD2 A:PHE65 4.4 36.4 1.0 C A:ASP64 4.5 34.7 1.0 OE2 A:GLU157 4.6 36.7 1.0 NBF A:ZZX302 4.7 53.6 1.0 CAO A:ZZX302 4.7 53.6 1.0 CBA A:ZZX302 4.8 53.6 1.0 CB A:PHE65 4.9 36.4 1.0

Magnesium binding site 3 out of 4 in 7jn3

Magnesium Binding Sites List in 7jn3

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg303 b:58.8 occ:1.00 OD1 E:ASP64 2.1 50.6 1.0 OD1 E:ASP121 2.1 60.3 1.0 OD2 E:ASP121 2.4 60.3 1.0 CG E:ASP121 2.5 60.3 1.0 OAE E:ZZX302 2.7 69.2 1.0 CAS E:ZZX302 3.1 69.2 1.0 MG E:MG304 3.1 62.0 1.0 OAG E:ZZX302 3.2 69.2 1.0 CG E:ASP64 3.4 50.6 1.0 CAY E:ZZX302 3.5 69.2 1.0 CAW E:ZZX302 3.7 69.2 1.0 NBD E:ZZX302 3.8 69.2 1.0 CB E:ASP121 3.8 60.3 1.0 CA E:ASP64 4.2 50.6 1.0 OD2 E:ASP64 4.2 50.6 1.0 CAM E:ZZX302 4.2 69.2 1.0 CB E:ASP64 4.3 50.6 1.0 N E:PHE65 4.4 57.1 1.0 OE2 E:GLU157 4.5 52.5 1.0 NE2 E:GLN153 4.5 56.1 1.0 C E:ASP64 4.7 50.6 1.0 CAO E:ZZX302 4.8 69.2 1.0 NBF E:ZZX302 4.8 69.2 1.0 CBA E:ZZX302 4.8 69.2 1.0 O E:THR63 5.0 46.4 1.0 CA E:ASP121 5.0 60.3 1.0

Magnesium binding site 4 out of 4 in 7jn3

Magnesium Binding Sites List in 7jn3

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg304 b:62.0 occ:1.00 OAG E:ZZX302 2.0 69.2 1.0 OE2 E:GLU157 2.0 52.5 1.0 OD1 E:ASP64 2.1 50.6 1.0 OD2 E:ASP64 2.2 50.6 1.0 CG E:ASP64 2.3 50.6 1.0 CD E:GLU157 2.6 52.5 1.0 OE1 E:GLU157 2.6 52.5 1.0 OAF E:ZZX302 2.8 69.2 1.0 CAW E:ZZX302 2.8 69.2 1.0 MG E:MG303 3.1 58.8 1.0 CBA E:ZZX302 3.3 69.2 1.0 CAZ E:ZZX302 3.4 69.2 1.0 CB E:ASP64 3.6 50.6 1.0 CAY E:ZZX302 3.7 69.2 1.0 OD1 E:ASP121 3.9 60.3 1.0 NE2 E:GLN153 4.0 56.1 1.0 CG E:GLU157 4.1 52.5 1.0 CB E:SER150 4.2 60.8 1.0 OAE E:ZZX302 4.3 69.2 1.0 CAS E:ZZX302 4.3 69.2 1.0 CBB E:ZZX302 4.5 69.2 1.0 NBE E:ZZX302 4.6 69.2 1.0 CA E:ASP64 4.6 50.6 1.0 OG E:SER150 4.6 60.8 1.0 NBF E:ZZX302 4.6 69.2 1.0 CG E:ASP121 4.7 60.3 1.0 CG E:GLN153 4.8 56.1 1.0 CD E:GLN153 4.9 56.1 1.0 N E:PHE65 4.9 57.1 1.0

Reference: