Magnesium in PDB 7jpp: Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain

The binding sites of Magnesium atom in the Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain (pdb code 7jpp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain, PDB code: 7jpp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:47.8 occ:1.00 O1G D:ATP901 2.1 48.2 1.0 CG2 D:THR74 2.5 51.3 1.0 O3B D:ATP901 2.7 48.2 1.0 PG D:ATP901 2.7 48.2 1.0 O3G D:ATP901 3.0 48.2 1.0 OD1 D:ASP159 3.6 49.0 1.0 OD2 D:ASP159 3.9 49.0 1.0 NH2 E:ARG143 3.9 35.8 1.0 CB D:THR74 4.0 51.3 1.0 CG D:ASP159 4.2 49.0 1.0 PB D:ATP901 4.2 48.2 1.0 O2G D:ATP901 4.2 48.2 1.0 OE2 E:GLU146 4.5 41.5 1.0 OG1 D:THR74 4.5 51.3 1.0 O3A D:ATP901 4.5 48.2 1.0 N D:THR74 4.6 51.3 1.0 O2B D:ATP901 4.7 48.2 1.0 CD2 D:LEU192 4.8 46.2 1.0 CA D:THR74 4.9 51.3 1.0

Magnesium binding site 2 out of 2 in the Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-O2WH: Human Origin Recognition Complex (Orc) with Dynamic/Unresolved ORC1 Aaa+ Domain within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:37.5 occ:1.00 O1B E:ATP501 2.1 46.7 1.0 O1A E:ATP501 2.3 46.7 1.0 OG1 E:THR44 2.8 39.5 1.0 PB E:ATP501 3.2 46.7 1.0 PA E:ATP501 3.2 46.7 1.0 O1G E:ATP501 3.4 46.7 1.0 O3B E:ATP501 3.4 46.7 1.0 O2A E:ATP501 3.6 46.7 1.0 O3A E:ATP501 3.6 46.7 1.0 CB E:THR44 3.8 39.5 1.0 PG E:ATP501 3.9 46.7 1.0 OD1 E:ASP125 4.1 38.8 1.0 O3G E:ATP501 4.2 46.7 1.0 N E:THR44 4.5 39.5 1.0 OD2 E:ASP125 4.5 38.8 1.0 O2B E:ATP501 4.5 46.7 1.0 O5' E:ATP501 4.6 46.7 1.0 NZ E:LYS126 4.8 39.8 1.0 CG2 E:THR44 4.8 39.5 1.0 CA E:THR44 4.8 39.5 1.0 CG E:ASP125 4.8 38.8 1.0

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622