Magnesium in PDB 7jpq: Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5

The binding sites of Magnesium atom in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 (pdb code 7jpq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5, PDB code: 7jpq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:44.6 occ:1.00 OG1 D:THR74 2.1 50.1 1.0 O3B D:ATP901 2.1 58.2 1.0 PG D:ATP901 2.9 58.2 1.0 O1G D:ATP901 2.9 58.2 1.0 O2G D:ATP901 3.1 58.2 1.0 O1B D:ATP901 3.2 58.2 1.0 PB D:ATP901 3.3 58.2 1.0 CB D:THR74 3.3 50.1 1.0 NH2 E:ARG143 3.8 38.2 1.0 OD2 D:ASP159 4.0 44.5 1.0 CG2 D:THR74 4.2 50.1 1.0 N D:THR74 4.2 50.1 1.0 O3A D:ATP901 4.2 58.2 1.0 O3G D:ATP901 4.3 58.2 1.0 OE2 E:GLU146 4.3 43.7 1.0 O2B D:ATP901 4.3 58.2 1.0 CA D:THR74 4.3 50.1 1.0 OD1 D:ASP159 4.4 44.5 1.0 O1A D:ATP901 4.6 58.2 1.0 CG D:ASP159 4.7 44.5 1.0 CD2 D:LEU192 4.9 43.0 1.0

Magnesium binding site 2 out of 2 in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:53.3 occ:1.00 O3G E:ATP501 2.8 49.3 1.0 OD1 E:ASP125 2.9 36.5 1.0 CD E:LYS126 3.4 39.3 1.0 O1G E:ATP501 3.4 49.3 1.0 CE E:LYS126 3.4 39.3 1.0 PG E:ATP501 3.5 49.3 1.0 CG E:ASP125 3.9 36.5 1.0 CG E:LYS126 4.1 39.3 1.0 N E:LYS126 4.1 39.3 1.0 CE E:LYS43 4.2 39.8 1.0 OD2 E:ASP125 4.2 36.5 1.0 O2G E:ATP501 4.3 49.3 1.0 CA E:LYS126 4.4 39.3 1.0 O E:LEU157 4.5 33.8 1.0 OG1 E:THR44 4.6 42.6 1.0 NZ E:LYS43 4.7 39.8 1.0 NZ E:LYS126 4.8 39.3 1.0 CB E:LYS126 4.9 39.3 1.0 O3B E:ATP501 4.9 49.3 1.0 O1B E:ATP501 4.9 49.3 1.0 C E:LEU157 4.9 33.8 1.0

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622