Magnesium in PDB 7jpq: Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 (pdb code 7jpq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5, PDB code: 7jpq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7jpq

Go back to Magnesium Binding Sites List in 7jpq
Magnesium binding site 1 out of 2 in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:44.6
occ:1.00
OG1 D:THR74 2.1 50.1 1.0
O3B D:ATP901 2.1 58.2 1.0
PG D:ATP901 2.9 58.2 1.0
O1G D:ATP901 2.9 58.2 1.0
O2G D:ATP901 3.1 58.2 1.0
O1B D:ATP901 3.2 58.2 1.0
PB D:ATP901 3.3 58.2 1.0
CB D:THR74 3.3 50.1 1.0
NH2 E:ARG143 3.8 38.2 1.0
OD2 D:ASP159 4.0 44.5 1.0
CG2 D:THR74 4.2 50.1 1.0
N D:THR74 4.2 50.1 1.0
O3A D:ATP901 4.2 58.2 1.0
O3G D:ATP901 4.3 58.2 1.0
OE2 E:GLU146 4.3 43.7 1.0
O2B D:ATP901 4.3 58.2 1.0
CA D:THR74 4.3 50.1 1.0
OD1 D:ASP159 4.4 44.5 1.0
O1A D:ATP901 4.6 58.2 1.0
CG D:ASP159 4.7 44.5 1.0
CD2 D:LEU192 4.9 43.0 1.0

Magnesium binding site 2 out of 2 in 7jpq

Go back to Magnesium Binding Sites List in 7jpq
Magnesium binding site 2 out of 2 in the Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-O2-5: Human Origin Recognition Complex (Orc) with Subunits 2,3,4,5 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:53.3
occ:1.00
O3G E:ATP501 2.8 49.3 1.0
OD1 E:ASP125 2.9 36.5 1.0
CD E:LYS126 3.4 39.3 1.0
O1G E:ATP501 3.4 49.3 1.0
CE E:LYS126 3.4 39.3 1.0
PG E:ATP501 3.5 49.3 1.0
CG E:ASP125 3.9 36.5 1.0
CG E:LYS126 4.1 39.3 1.0
N E:LYS126 4.1 39.3 1.0
CE E:LYS43 4.2 39.8 1.0
OD2 E:ASP125 4.2 36.5 1.0
O2G E:ATP501 4.3 49.3 1.0
CA E:LYS126 4.4 39.3 1.0
O E:LEU157 4.5 33.8 1.0
OG1 E:THR44 4.6 42.6 1.0
NZ E:LYS43 4.7 39.8 1.0
NZ E:LYS126 4.8 39.3 1.0
CB E:LYS126 4.9 39.3 1.0
O3B E:ATP501 4.9 49.3 1.0
O1B E:ATP501 4.9 49.3 1.0
C E:LEU157 4.9 33.8 1.0

Reference:

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622
Page generated: Tue Dec 15 03:40:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy