Magnesium in PDB 7jpr: Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation (pdb code 7jpr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation, PDB code: 7jpr:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7jpr

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Magnesium binding site 1 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:0.2
occ:1.00
O1B A:ATP901 2.0 0.3 1.0
O3G A:ATP901 2.2 0.3 1.0
OG1 A:THR541 2.2 0.9 1.0
O3B A:ATP901 2.7 0.3 1.0
PB A:ATP901 2.7 0.3 1.0
PG A:ATP901 3.0 0.3 1.0
O3A A:ATP901 3.2 0.3 1.0
CB A:THR541 3.5 0.9 1.0
OD2 A:ASP620 3.6 0.9 1.0
O1G A:ATP901 4.0 0.3 1.0
O2G A:ATP901 4.1 0.3 1.0
O2B A:ATP901 4.2 0.3 1.0
CG2 A:THR541 4.2 0.9 1.0
N A:THR541 4.5 0.9 1.0
CA A:THR541 4.6 0.9 1.0
CG A:ASP620 4.7 0.9 1.0
PA A:ATP901 4.7 0.3 1.0
NH2 A:ARG720 4.8 0.7 1.0
O1A A:ATP901 4.8 0.3 1.0
OD1 A:ASP620 4.9 0.9 1.0

Magnesium binding site 2 out of 3 in 7jpr

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Magnesium binding site 2 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:0.7
occ:1.00
O1G D:ATP901 2.1 0.4 1.0
O3G D:ATP901 2.3 0.4 1.0
PG D:ATP901 2.6 0.4 1.0
CG2 D:THR74 2.6 0.9 1.0
O3B D:ATP901 3.2 0.4 1.0
OD2 D:ASP159 3.9 0.5 1.0
O2G D:ATP901 4.0 0.4 1.0
CB D:THR74 4.0 0.9 1.0
O1A D:ATP901 4.4 0.4 1.0
OG1 D:THR74 4.5 0.9 1.0
PB D:ATP901 4.6 0.4 1.0
CD2 D:LEU192 4.7 0.8 1.0
CG D:ASP159 4.8 0.5 1.0
O2B D:ATP901 4.8 0.4 1.0
CB D:ASP159 4.9 0.5 1.0
OE1 E:GLU146 5.0 0.6 1.0

Magnesium binding site 3 out of 3 in 7jpr

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Magnesium binding site 3 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:97.7
occ:1.00
O3G E:ATP501 2.1 0.3 1.0
O1B E:ATP501 2.1 0.3 1.0
OG1 E:THR44 2.2 1.0 1.0
PB E:ATP501 3.3 0.3 1.0
O3B E:ATP501 3.3 0.3 1.0
PG E:ATP501 3.3 0.3 1.0
O1A E:ATP501 3.4 0.3 1.0
CB E:THR44 3.4 1.0 1.0
O3A E:ATP501 4.0 0.3 1.0
O1G E:ATP501 4.1 0.3 1.0
PA E:ATP501 4.1 0.3 1.0
CG2 E:THR44 4.2 1.0 1.0
O2A E:ATP501 4.4 0.3 1.0
N E:THR44 4.5 1.0 1.0
O2G E:ATP501 4.5 0.3 1.0
CA E:THR44 4.6 1.0 1.0
O2B E:ATP501 4.6 0.3 1.0
OD2 E:ASP125 4.7 1.0 1.0

Reference:

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622
Page generated: Tue Dec 15 03:40:24 2020

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