Magnesium in PDB 7jpr: Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation

The binding sites of Magnesium atom in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation (pdb code 7jpr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation, PDB code: 7jpr:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:0.2 occ:1.00 O1B A:ATP901 2.0 0.3 1.0 O3G A:ATP901 2.2 0.3 1.0 OG1 A:THR541 2.2 0.9 1.0 O3B A:ATP901 2.7 0.3 1.0 PB A:ATP901 2.7 0.3 1.0 PG A:ATP901 3.0 0.3 1.0 O3A A:ATP901 3.2 0.3 1.0 CB A:THR541 3.5 0.9 1.0 OD2 A:ASP620 3.6 0.9 1.0 O1G A:ATP901 4.0 0.3 1.0 O2G A:ATP901 4.1 0.3 1.0 O2B A:ATP901 4.2 0.3 1.0 CG2 A:THR541 4.2 0.9 1.0 N A:THR541 4.5 0.9 1.0 CA A:THR541 4.6 0.9 1.0 CG A:ASP620 4.7 0.9 1.0 PA A:ATP901 4.7 0.3 1.0 NH2 A:ARG720 4.8 0.7 1.0 O1A A:ATP901 4.8 0.3 1.0 OD1 A:ASP620 4.9 0.9 1.0

Magnesium binding site 2 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg902 b:0.7 occ:1.00 O1G D:ATP901 2.1 0.4 1.0 O3G D:ATP901 2.3 0.4 1.0 PG D:ATP901 2.6 0.4 1.0 CG2 D:THR74 2.6 0.9 1.0 O3B D:ATP901 3.2 0.4 1.0 OD2 D:ASP159 3.9 0.5 1.0 O2G D:ATP901 4.0 0.4 1.0 CB D:THR74 4.0 0.9 1.0 O1A D:ATP901 4.4 0.4 1.0 OG1 D:THR74 4.5 0.9 1.0 PB D:ATP901 4.6 0.4 1.0 CD2 D:LEU192 4.7 0.8 1.0 CG D:ASP159 4.8 0.5 1.0 O2B D:ATP901 4.8 0.4 1.0 CB D:ASP159 4.9 0.5 1.0 OE1 E:GLU146 5.0 0.6 1.0

Magnesium binding site 3 out of 3 in the Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Orc-Open: Human Origin Recognition Complex (Orc) in An Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:97.7 occ:1.00 O3G E:ATP501 2.1 0.3 1.0 O1B E:ATP501 2.1 0.3 1.0 OG1 E:THR44 2.2 1.0 1.0 PB E:ATP501 3.3 0.3 1.0 O3B E:ATP501 3.3 0.3 1.0 PG E:ATP501 3.3 0.3 1.0 O1A E:ATP501 3.4 0.3 1.0 CB E:THR44 3.4 1.0 1.0 O3A E:ATP501 4.0 0.3 1.0 O1G E:ATP501 4.1 0.3 1.0 PA E:ATP501 4.1 0.3 1.0 CG2 E:THR44 4.2 1.0 1.0 O2A E:ATP501 4.4 0.3 1.0 N E:THR44 4.5 1.0 1.0 O2G E:ATP501 4.5 0.3 1.0 CA E:THR44 4.6 1.0 1.0 O2B E:ATP501 4.6 0.3 1.0 OD2 E:ASP125 4.7 1.0 1.0

M.J.Jaremko, K.F.On, D.R.Thomas, B.Stillman, L.Joshua-Tor. The Dynamic Nature of the Human Origin Recognition Complex Revealed Through Five Cryoem Structures. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32808929
DOI: 10.7554/ELIFE.58622