Atomistry » Magnesium » PDB 7jpp-7k06 » 7jt8
Atomistry »
  Magnesium »
    PDB 7jpp-7k06 »
      7jt8 »

Magnesium in PDB 7jt8: Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus

Enzymatic activity of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus

All present enzymatic activity of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus:
6.3.2.13;

Protein crystallography data

The structure of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 7jt8 was solved by V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.58 / 1.84
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 119.783, 119.783, 70.746, 90, 90, 120
R / Rfree (%) 17.5 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus (pdb code 7jt8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 7jt8:

Magnesium binding site 1 out of 1 in 7jt8

Go back to Magnesium Binding Sites List in 7jt8
Magnesium binding site 1 out of 1 in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg501

b:33.5
occ:1.00
O I:HOH871 2.0 26.1 1.0
O2 I:SO4505 2.6 24.5 1.0
O I:HOH669 2.9 27.1 1.0
O I:HOH912 3.1 12.8 1.0
O1 I:SO4505 3.5 28.0 1.0
S I:SO4505 3.6 23.0 1.0
ND2 I:ASN294 3.6 14.5 1.0
O I:HOH667 3.7 26.4 1.0
CG I:ARG325 3.7 20.3 1.0
OG1 I:THR117 3.8 15.4 1.0
O4 I:SO4505 4.1 22.0 1.0
CB I:THR117 4.3 14.5 1.0
CB I:TYR290 4.4 18.2 1.0
CD2 I:TYR290 4.4 19.1 1.0
CA I:GLY114 4.4 18.2 1.0
CE1 I:PHE339 4.5 27.8 1.0
O I:HOH653 4.5 24.0 1.0
NE I:ARG325 4.6 21.0 1.0
N I:GLY114 4.7 13.9 1.0
CB I:ARG325 4.7 19.3 1.0
CD I:ARG325 4.8 21.4 1.0
O3 I:SO4505 4.8 24.2 1.0
CG I:TYR290 4.8 18.9 1.0
CG I:ASN294 4.8 16.5 1.0
CG2 I:THR117 5.0 16.0 1.0
O I:HOH884 5.0 35.7 1.0

Reference:

V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi. Structural Characterisation of A Pseudomurein Peptide Ligase Type E (Pmure) From Methanogenic Archaea To Be Published.
Page generated: Wed Oct 2 21:59:52 2024

Last articles

Cl in 3BE8
Cl in 3BE6
Cl in 3BFT
Cl in 3BFH
Cl in 3BFB
Cl in 3BE5
Cl in 3BDV
Cl in 3BBJ
Cl in 3BBT
Cl in 3BD1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy