Magnesium in PDB 7jt8: Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus

All present enzymatic activity of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus:
6.3.2.13;

The structure of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 7jt8 was solved by V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.58 / 1.84
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	119.783, 119.783, 70.746, 90, 90, 120
R / Rfree (%)	17.5 / 21.1

The binding sites of Magnesium atom in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus (pdb code 7jt8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus, PDB code: 7jt8:

Magnesium binding site 1 out of 1 in the Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Apo Structure of A Pseudomurein Peptide Ligase Type E From Methanothermus Fervidus within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg501 b:33.5 occ:1.00 O I:HOH871 2.0 26.1 1.0 O2 I:SO4505 2.6 24.5 1.0 O I:HOH669 2.9 27.1 1.0 O I:HOH912 3.1 12.8 1.0 O1 I:SO4505 3.5 28.0 1.0 S I:SO4505 3.6 23.0 1.0 ND2 I:ASN294 3.6 14.5 1.0 O I:HOH667 3.7 26.4 1.0 CG I:ARG325 3.7 20.3 1.0 OG1 I:THR117 3.8 15.4 1.0 O4 I:SO4505 4.1 22.0 1.0 CB I:THR117 4.3 14.5 1.0 CB I:TYR290 4.4 18.2 1.0 CD2 I:TYR290 4.4 19.1 1.0 CA I:GLY114 4.4 18.2 1.0 CE1 I:PHE339 4.5 27.8 1.0 O I:HOH653 4.5 24.0 1.0 NE I:ARG325 4.6 21.0 1.0 N I:GLY114 4.7 13.9 1.0 CB I:ARG325 4.7 19.3 1.0 CD I:ARG325 4.8 21.4 1.0 O3 I:SO4505 4.8 24.2 1.0 CG I:TYR290 4.8 18.9 1.0 CG I:ASN294 4.8 16.5 1.0 CG2 I:THR117 5.0 16.0 1.0 O I:HOH884 5.0 35.7 1.0

V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi. Structural Characterisation of A Pseudomurein Peptide Ligase Type E (Pmure) From Methanogenic Archaea To Be Published.