Magnesium in PDB 7jyu: Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus

The structure of Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus, PDB code: 7jyu was solved by A.T.Nguyen, C.Szeto, J.Rossjohn, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.95 / 2.75
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	79.921, 120.246, 187.796, 90, 90, 90
R / Rfree (%)	18.9 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus (pdb code 7jyu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus, PDB code: 7jyu:

Magnesium binding site 1 out of 1 in the Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hla-A*2402 in Complex with Iyfspirvtf, An 10-Mer Epitope From Influenza B Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:78.8 occ:1.00 OE1 A:GLN180 2.9 106.6 1.0 NE2 A:HIS3 3.1 68.1 1.0 CE1 A:HIS3 3.3 67.7 1.0 O A:HOH430 3.6 46.8 1.0 CD A:GLN180 4.1 108.8 1.0 CD2 A:HIS3 4.4 68.1 1.0 ND1 A:HIS3 4.6 67.8 1.0 O A:GLY1 4.6 62.6 1.0 NE2 A:GLN180 4.7 104.0 1.0 O A:GLN180 4.8 68.3 1.0 CA A:GLN180 5.0 61.2 1.0

A.T.Nguyen, C.Szeto, J.Rossjohn, S.Gras. Crystal Structure of Hla A*2402 in Complex with Iyfspirvtf, An 10-Mer Influenza B Epitope Nat Commun 2021.
ISSN: ESSN 2041-1723