Magnesium in PDB 7kcl: Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Magnesium atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp (pdb code 7kcl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp, PDB code: 7kcl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:37.5 occ:1.00 O3G A:ANP801 2.0 53.3 1.0 OD1 A:ASN119 2.1 33.5 1.0 O1B A:ANP801 2.2 53.3 1.0 O2A A:ANP801 2.8 53.3 1.0 CG A:ASN119 3.3 33.5 1.0 PG A:ANP801 3.3 53.3 1.0 PB A:ANP801 3.6 53.3 1.0 O1G A:ANP801 3.7 53.3 1.0 O A:GLU115 3.8 34.0 1.0 ND2 A:ASN119 4.0 33.5 1.0 N A:ASN119 4.0 33.5 1.0 N3B A:ANP801 4.1 53.3 1.0 PA A:ANP801 4.1 53.3 1.0 CB A:SER118 4.1 32.5 1.0 CA A:ASN119 4.3 33.5 1.0 CA A:GLY199 4.3 38.6 1.0 O3A A:ANP801 4.4 53.3 1.0 CB A:ASN119 4.4 33.5 1.0 CA A:GLY204 4.4 35.1 1.0 OE2 A:GLU115 4.5 34.0 1.0 O2G A:ANP801 4.5 53.3 1.0 O2B A:ANP801 4.6 53.3 1.0 C A:GLU115 4.6 34.0 1.0 OD2 A:ASP122 4.6 36.9 1.0 C A:SER118 4.6 32.5 1.0 N A:GLY199 4.7 38.6 1.0 CA A:GLU115 4.8 34.0 1.0 CB A:GLU115 4.9 34.0 1.0 CD A:GLU115 5.0 34.0 1.0 O1A A:ANP801 5.0 53.3 1.0 C A:GLY204 5.0 35.1 1.0

Magnesium binding site 2 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:29.8 occ:1.00 O3G B:ANP801 2.0 27.9 1.0 OD1 B:ASN119 2.0 29.6 1.0 O1B B:ANP801 2.1 27.9 1.0 O2A B:ANP801 2.9 27.9 1.0 CG B:ASN119 3.2 29.6 1.0 PG B:ANP801 3.3 27.9 1.0 PB B:ANP801 3.5 27.9 1.0 O1G B:ANP801 3.5 27.9 1.0 N3B B:ANP801 3.9 27.9 1.0 CA B:GLY199 4.0 34.8 1.0 ND2 B:ASN119 4.0 29.6 1.0 O B:GLU115 4.0 32.2 1.0 OE2 B:GLU115 4.0 32.2 1.0 N B:ASN119 4.1 29.6 1.0 PA B:ANP801 4.3 27.9 1.0 CA B:ASN119 4.3 29.6 1.0 OD2 B:ASP122 4.3 37.1 1.0 CB B:ASN119 4.3 29.6 1.0 CB B:SER118 4.4 29.9 1.0 O3A B:ANP801 4.4 27.9 1.0 N B:GLY199 4.4 34.8 1.0 O2B B:ANP801 4.4 27.9 1.0 O2G B:ANP801 4.5 27.9 1.0 CA B:GLY204 4.6 30.6 1.0 C B:SER118 4.7 29.9 1.0 C B:GLU115 4.7 32.2 1.0 CA B:GLU115 4.9 32.2 1.0

Y.X.Liu, D.A.Agard, D.Elnatan, M.Sun, A.G.Myasnikov. Cryo-Em Reveals the Dynamic Interplay Between Mitochondrial HSP90 and Sdhb Folding Intermediates To Be Published.