Magnesium in PDB 7kcm: Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Iron	(Fe)	2 atoms

The binding sites of Magnesium atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp (pdb code 7kcm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp, PDB code: 7kcm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:46.8 occ:1.00 O3G A:ANP801 2.0 63.5 1.0 OD1 A:ASN119 2.0 41.5 1.0 O1B A:ANP801 2.1 63.5 1.0 O2A A:ANP801 2.6 63.5 1.0 CG A:ASN119 3.2 41.5 1.0 PG A:ANP801 3.3 63.5 1.0 PB A:ANP801 3.5 63.5 1.0 O1G A:ANP801 3.7 63.5 1.0 O A:GLU115 3.8 41.4 1.0 ND2 A:ASN119 3.9 41.5 1.0 PA A:ANP801 4.0 63.5 1.0 N3B A:ANP801 4.0 63.5 1.0 N A:ASN119 4.1 41.5 1.0 CB A:SER118 4.2 41.5 1.0 O3A A:ANP801 4.3 63.5 1.0 CA A:GLY204 4.3 47.7 1.0 CA A:GLY199 4.3 48.8 1.0 CA A:ASN119 4.3 41.5 1.0 CB A:ASN119 4.3 41.5 1.0 OE2 A:GLU115 4.4 41.4 1.0 C A:SER118 4.5 41.5 1.0 O2G A:ANP801 4.5 63.5 1.0 O2B A:ANP801 4.5 63.5 1.0 OD2 A:ASP122 4.6 48.9 1.0 C A:GLU115 4.7 41.4 1.0 N A:GLY199 4.8 48.8 1.0 CD A:GLU115 4.9 41.4 1.0 O1A A:ANP801 4.9 63.5 1.0 CA A:GLU115 4.9 41.4 1.0 C A:GLY204 4.9 47.7 1.0 N A:GLY204 4.9 47.7 1.0 CB A:GLU115 5.0 41.4 1.0 CA A:SER118 5.0 41.5 1.0

Magnesium binding site 2 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:43.3 occ:1.00 O3G B:ANP801 2.0 50.7 1.0 OD1 B:ASN119 2.0 44.8 1.0 O1B B:ANP801 2.1 50.7 1.0 O2A B:ANP801 2.9 50.7 1.0 PG B:ANP801 3.2 50.7 1.0 CG B:ASN119 3.3 44.8 1.0 PB B:ANP801 3.4 50.7 1.0 O1G B:ANP801 3.5 50.7 1.0 N3B B:ANP801 3.9 50.7 1.0 CA B:GLY199 3.9 44.1 1.0 OE2 B:GLU115 3.9 39.4 1.0 O B:GLU115 4.0 39.4 1.0 N B:ASN119 4.0 44.8 1.0 ND2 B:ASN119 4.0 44.8 1.0 CB B:SER118 4.2 39.3 1.0 CA B:ASN119 4.2 44.8 1.0 PA B:ANP801 4.3 50.7 1.0 N B:GLY199 4.3 44.1 1.0 CB B:ASN119 4.3 44.8 1.0 OD2 B:ASP122 4.4 47.0 1.0 O3A B:ANP801 4.4 50.7 1.0 O2B B:ANP801 4.4 50.7 1.0 C B:SER118 4.4 39.3 1.0 O2G B:ANP801 4.5 50.7 1.0 CA B:GLY204 4.7 41.9 1.0 O B:SER118 4.8 39.3 1.0 C B:GLU115 4.9 39.4 1.0 CA B:SER118 4.9 39.3 1.0

Y.X.Liu, D.A.Agard, D.Elnatan, M.Sun, A.G.Myasnikov. Cryo-Em Reveals the Dynamic Interplay Between Mitochondrial HSP90 and Sdhb Folding Intermediates To Be Published.