Magnesium in PDB 7kcm: Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp

Other elements in 7kcm:

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp also contains other interesting chemical elements:

Potassium (K) 2 atoms
Iron (Fe) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp (pdb code 7kcm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp, PDB code: 7kcm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7kcm

Go back to Magnesium Binding Sites List in 7kcm
Magnesium binding site 1 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:46.8
occ:1.00
O3G A:ANP801 2.0 63.5 1.0
OD1 A:ASN119 2.0 41.5 1.0
O1B A:ANP801 2.1 63.5 1.0
O2A A:ANP801 2.6 63.5 1.0
CG A:ASN119 3.2 41.5 1.0
PG A:ANP801 3.3 63.5 1.0
PB A:ANP801 3.5 63.5 1.0
O1G A:ANP801 3.7 63.5 1.0
O A:GLU115 3.8 41.4 1.0
ND2 A:ASN119 3.9 41.5 1.0
PA A:ANP801 4.0 63.5 1.0
N3B A:ANP801 4.0 63.5 1.0
N A:ASN119 4.1 41.5 1.0
CB A:SER118 4.2 41.5 1.0
O3A A:ANP801 4.3 63.5 1.0
CA A:GLY204 4.3 47.7 1.0
CA A:GLY199 4.3 48.8 1.0
CA A:ASN119 4.3 41.5 1.0
CB A:ASN119 4.3 41.5 1.0
OE2 A:GLU115 4.4 41.4 1.0
C A:SER118 4.5 41.5 1.0
O2G A:ANP801 4.5 63.5 1.0
O2B A:ANP801 4.5 63.5 1.0
OD2 A:ASP122 4.6 48.9 1.0
C A:GLU115 4.7 41.4 1.0
N A:GLY199 4.8 48.8 1.0
CD A:GLU115 4.9 41.4 1.0
O1A A:ANP801 4.9 63.5 1.0
CA A:GLU115 4.9 41.4 1.0
C A:GLY204 4.9 47.7 1.0
N A:GLY204 4.9 47.7 1.0
CB A:GLU115 5.0 41.4 1.0
CA A:SER118 5.0 41.5 1.0

Magnesium binding site 2 out of 2 in 7kcm

Go back to Magnesium Binding Sites List in 7kcm
Magnesium binding site 2 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) in Complex with Sdhb in the Presence of Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:43.3
occ:1.00
O3G B:ANP801 2.0 50.7 1.0
OD1 B:ASN119 2.0 44.8 1.0
O1B B:ANP801 2.1 50.7 1.0
O2A B:ANP801 2.9 50.7 1.0
PG B:ANP801 3.2 50.7 1.0
CG B:ASN119 3.3 44.8 1.0
PB B:ANP801 3.4 50.7 1.0
O1G B:ANP801 3.5 50.7 1.0
N3B B:ANP801 3.9 50.7 1.0
CA B:GLY199 3.9 44.1 1.0
OE2 B:GLU115 3.9 39.4 1.0
O B:GLU115 4.0 39.4 1.0
N B:ASN119 4.0 44.8 1.0
ND2 B:ASN119 4.0 44.8 1.0
CB B:SER118 4.2 39.3 1.0
CA B:ASN119 4.2 44.8 1.0
PA B:ANP801 4.3 50.7 1.0
N B:GLY199 4.3 44.1 1.0
CB B:ASN119 4.3 44.8 1.0
OD2 B:ASP122 4.4 47.0 1.0
O3A B:ANP801 4.4 50.7 1.0
O2B B:ANP801 4.4 50.7 1.0
C B:SER118 4.4 39.3 1.0
O2G B:ANP801 4.5 50.7 1.0
CA B:GLY204 4.7 41.9 1.0
O B:SER118 4.8 39.3 1.0
C B:GLU115 4.9 39.4 1.0
CA B:SER118 4.9 39.3 1.0

Reference:

Y.X.Liu, D.A.Agard, D.Elnatan, M.Sun, A.G.Myasnikov. Cryo-Em Reveals the Dynamic Interplay Between Mitochondrial HSP90 and Sdhb Folding Intermediates To Be Published.
Page generated: Fri Nov 5 15:12:58 2021

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