Magnesium in PDB 7ksm: Human Mitochondrial LONP1 with Endogenous Substrate

Enzymatic activity of Human Mitochondrial LONP1 with Endogenous Substrate

All present enzymatic activity of Human Mitochondrial LONP1 with Endogenous Substrate:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Mitochondrial LONP1 with Endogenous Substrate (pdb code 7ksm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Human Mitochondrial LONP1 with Endogenous Substrate, PDB code: 7ksm:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7ksm

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Magnesium binding site 1 out of 4 in the Human Mitochondrial LONP1 with Endogenous Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Mitochondrial LONP1 with Endogenous Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:20.4
occ:1.00
O2B A:ATP1000 2.1 30.1 1.0
OG1 A:THR530 2.4 28.4 1.0
O3G A:ATP1000 2.5 30.1 1.0
PB A:ATP1000 3.3 30.1 1.0
O3B A:ATP1000 3.4 30.1 1.0
PG A:ATP1000 3.6 30.1 1.0
CB A:THR530 3.6 28.4 1.0
OD1 A:ASP590 3.8 41.2 1.0
O3A A:ATP1000 4.0 30.1 1.0
NH2 B:ARG652 4.2 25.0 1.0
OE1 A:GLU591 4.3 48.5 1.0
CG2 A:THR530 4.4 28.4 1.0
OG1 A:THR638 4.5 35.1 1.0
O1B A:ATP1000 4.6 30.1 1.0
O1G A:ATP1000 4.6 30.1 1.0
O2G A:ATP1000 4.6 30.1 1.0
CA A:THR530 4.7 28.4 1.0
N A:THR530 4.7 28.4 1.0
CG A:ASP590 4.8 41.2 1.0
CD A:GLU591 4.9 48.5 1.0

Magnesium binding site 2 out of 4 in 7ksm

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Magnesium binding site 2 out of 4 in the Human Mitochondrial LONP1 with Endogenous Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Mitochondrial LONP1 with Endogenous Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:17.8
occ:1.00
OG1 B:THR530 2.0 18.3 1.0
O3G B:ATP1000 2.1 29.5 1.0
O2B B:ATP1000 2.3 29.5 1.0
CB B:THR530 3.1 18.3 1.0
PG B:ATP1000 3.5 29.5 1.0
PB B:ATP1000 3.5 29.5 1.0
OE2 B:GLU591 3.6 21.4 1.0
O3B B:ATP1000 3.8 29.5 1.0
CG2 B:THR530 3.9 18.3 1.0
NH2 C:ARG652 3.9 14.1 1.0
O1A B:ATP1000 4.2 29.5 1.0
CA B:THR530 4.3 18.3 1.0
O1G B:ATP1000 4.3 29.5 1.0
N B:THR530 4.3 18.3 1.0
O2G B:ATP1000 4.5 29.5 1.0
O1B B:ATP1000 4.5 29.5 1.0
O3A B:ATP1000 4.6 29.5 1.0
OD2 C:ASP612 4.7 15.1 1.0
OG1 B:THR638 4.7 16.1 1.0
PA B:ATP1000 4.8 29.5 1.0
OD1 B:ASP590 4.8 16.6 1.0
CD B:GLU591 4.8 21.4 1.0
CG B:ASP590 4.9 16.6 1.0

Magnesium binding site 3 out of 4 in 7ksm

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Magnesium binding site 3 out of 4 in the Human Mitochondrial LONP1 with Endogenous Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Mitochondrial LONP1 with Endogenous Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:22.2
occ:1.00
O2B D:ATP1001 2.0 29.5 1.0
OG1 C:THR530 2.1 12.3 1.0
O2G D:ATP1001 2.1 29.5 1.0
CB C:THR530 3.2 12.3 1.0
PB D:ATP1001 3.3 29.5 1.0
PG D:ATP1001 3.4 29.5 1.0
O1A D:ATP1001 3.5 29.5 1.0
O3B D:ATP1001 3.5 29.5 1.0
CG2 C:THR530 3.8 12.3 1.0
OE2 C:GLU591 4.1 18.0 1.0
NH2 D:ARG652 4.1 17.4 1.0
O3A D:ATP1001 4.2 29.5 1.0
O3G D:ATP1001 4.2 29.5 1.0
OD2 D:ASP612 4.3 18.4 1.0
PA D:ATP1001 4.4 29.5 1.0
O1B D:ATP1001 4.4 29.5 1.0
CA C:THR530 4.5 12.3 1.0
O1G D:ATP1001 4.5 29.5 1.0
NH2 C:ARG710 4.5 17.3 1.0
N C:THR530 4.6 12.3 1.0
OD1 C:ASP590 4.6 18.7 1.0
OG1 C:THR638 4.7 15.3 1.0
CZ D:ARG652 4.8 17.4 1.0
NH1 D:ARG652 4.9 17.4 1.0
CB C:ASP590 4.9 18.7 1.0

Magnesium binding site 4 out of 4 in 7ksm

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Magnesium binding site 4 out of 4 in the Human Mitochondrial LONP1 with Endogenous Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Mitochondrial LONP1 with Endogenous Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1003

b:13.6
occ:1.00
OG1 D:THR530 2.1 13.8 1.0
O2B D:ATP1002 2.1 15.3 1.0
O3G D:ATP1002 2.4 15.3 1.0
CB D:THR530 3.1 13.8 1.0
PB D:ATP1002 3.5 15.3 1.0
OD1 D:ASP590 3.7 21.8 1.0
CG2 D:THR530 3.7 13.8 1.0
PG D:ATP1002 3.7 15.3 1.0
NH2 E:ARG652 3.7 27.9 1.0
OD2 D:ASP590 3.8 21.8 1.0
O3B D:ATP1002 3.9 15.3 1.0
CG D:ASP590 4.2 21.8 1.0
OE2 D:GLU591 4.2 25.9 1.0
O1A D:ATP1002 4.3 15.3 1.0
O1G D:ATP1002 4.3 15.3 1.0
CA D:THR530 4.4 13.8 1.0
O1B D:ATP1002 4.4 15.3 1.0
OD2 E:ASP612 4.5 32.8 1.0
N D:THR530 4.5 13.8 1.0
CD D:GLU591 4.6 25.9 1.0
O3A D:ATP1002 4.6 15.3 1.0
OG1 D:THR638 4.8 20.5 1.0
PA D:ATP1002 4.8 15.3 1.0
O2G D:ATP1002 4.9 15.3 1.0

Reference:

M.Shin, E.R.Watson, S.R.Novick, P.Griffin, R.L.Wiseman, G.C.Lander. Human Mitochondrial LONP1 Bound to Endogenous Substrate To Be Published.
Page generated: Tue Dec 15 03:45:33 2020

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