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Magnesium in PDB 7kx7: Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex (pdb code 7kx7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex, PDB code: 7kx7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7kx7

Go back to Magnesium Binding Sites List in 7kx7
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:72.1
occ:1.00
OP1 B:U3 2.0 81.9 1.0
OXT A:LEU987 2.0 52.4 1.0
O A:LEU987 2.0 52.4 1.0
C A:LEU987 2.3 52.4 1.0
OP3 B:U1 2.3 73.2 1.0
P B:U3 3.4 81.9 1.0
NE2 A:GLN735 3.5 53.1 1.0
P B:U1 3.5 73.2 1.0
CA A:LEU987 3.8 52.4 1.0
OP2 B:U1 3.8 73.2 1.0
C5' B:U3 4.0 81.9 1.0
O3' B:C2 4.0 76.5 1.0
O5' B:U3 4.0 81.9 1.0
OE1 A:GLN735 4.0 53.1 1.0
C5' B:U1 4.0 73.2 1.0
CD A:GLN735 4.1 53.1 1.0
O5' B:U1 4.1 73.2 1.0
ND2 A:ASN947 4.3 51.9 1.0
N A:LEU987 4.5 52.4 1.0
OP2 B:U3 4.5 81.9 1.0
NZ A:LYS739 4.5 48.7 1.0
CB A:LEU987 4.7 52.4 1.0
OP1 B:U1 4.7 73.2 1.0
NZ A:LYS963 5.0 39.9 1.0

Magnesium binding site 2 out of 2 in 7kx7

Go back to Magnesium Binding Sites List in 7kx7
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:43.7
occ:1.00
OD1 A:ASP830 3.0 46.5 1.0
N A:GLY831 3.9 59.9 1.0
CA A:GLY831 4.0 59.9 1.0
N A:LYS870 4.1 39.5 1.0
CG A:ASP830 4.2 46.5 1.0
O A:VAL868 4.2 33.5 1.0
O A:VAL832 4.4 67.2 1.0
CB A:LYS870 4.5 39.5 1.0
CD A:LYS870 4.6 39.5 1.0
C A:GLY831 4.6 59.9 1.0
CA A:GLN869 4.7 32.5 1.0
OD2 A:ASP830 4.7 46.5 1.0
N A:VAL832 4.7 67.2 1.0
CG A:LYS870 4.7 39.5 1.0
C A:GLN869 4.9 32.5 1.0
CA A:LYS870 4.9 39.5 1.0

Reference:

T.A.Anzelon, S.Chowdhury, S.M.Hughes, Y.Xiao, G.C.Lander, I.J.Macrae. Structural Basis For Pirna-Targeting To Be Published.
Page generated: Wed Oct 2 22:58:45 2024

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