Magnesium in PDB 7kx7: Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex (pdb code 7kx7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex, PDB code: 7kx7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:72.1 occ:1.00 OP1 B:U3 2.0 81.9 1.0 OXT A:LEU987 2.0 52.4 1.0 O A:LEU987 2.0 52.4 1.0 C A:LEU987 2.3 52.4 1.0 OP3 B:U1 2.3 73.2 1.0 P B:U3 3.4 81.9 1.0 NE2 A:GLN735 3.5 53.1 1.0 P B:U1 3.5 73.2 1.0 CA A:LEU987 3.8 52.4 1.0 OP2 B:U1 3.8 73.2 1.0 C5' B:U3 4.0 81.9 1.0 O3' B:C2 4.0 76.5 1.0 O5' B:U3 4.0 81.9 1.0 OE1 A:GLN735 4.0 53.1 1.0 C5' B:U1 4.0 73.2 1.0 CD A:GLN735 4.1 53.1 1.0 O5' B:U1 4.1 73.2 1.0 ND2 A:ASN947 4.3 51.9 1.0 N A:LEU987 4.5 52.4 1.0 OP2 B:U3 4.5 81.9 1.0 NZ A:LYS739 4.5 48.7 1.0 CB A:LEU987 4.7 52.4 1.0 OP1 B:U1 4.7 73.2 1.0 NZ A:LYS963 5.0 39.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:43.7 occ:1.00 OD1 A:ASP830 3.0 46.5 1.0 N A:GLY831 3.9 59.9 1.0 CA A:GLY831 4.0 59.9 1.0 N A:LYS870 4.1 39.5 1.0 CG A:ASP830 4.2 46.5 1.0 O A:VAL868 4.2 33.5 1.0 O A:VAL832 4.4 67.2 1.0 CB A:LYS870 4.5 39.5 1.0 CD A:LYS870 4.6 39.5 1.0 C A:GLY831 4.6 59.9 1.0 CA A:GLN869 4.7 32.5 1.0 OD2 A:ASP830 4.7 46.5 1.0 N A:VAL832 4.7 67.2 1.0 CG A:LYS870 4.7 39.5 1.0 C A:GLN869 4.9 32.5 1.0 CA A:LYS870 4.9 39.5 1.0

T.A.Anzelon, S.Chowdhury, S.M.Hughes, Y.Xiao, G.C.Lander, I.J.Macrae. Structural Basis For Pirna-Targeting To Be Published.