Magnesium in PDB 7kx9: Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex (pdb code 7kx9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex, PDB code: 7kx9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:52.9 occ:1.00 HE22 A:GLN735 1.5 43.7 1.0 OXT A:LEU987 1.8 39.8 1.0 O A:LEU987 2.0 39.8 1.0 OP1 B:U1 2.2 48.5 1.0 C A:LEU987 2.2 39.8 1.0 NE2 A:GLN735 2.2 43.7 1.0 HE21 A:GLN735 2.5 43.7 1.0 OP1 B:U3 2.5 43.6 1.0 CD A:GLN735 3.4 43.7 1.0 P B:U1 3.5 48.5 1.0 HZ1 A:LYS739 3.5 40.6 1.0 CA A:LEU987 3.7 39.8 1.0 OE1 A:GLN735 3.8 43.7 1.0 P B:U3 3.9 43.6 1.0 H5' B:U1 3.9 48.5 1.0 OP2 B:U1 4.0 48.5 1.0 H5'' B:U3 4.0 43.6 1.0 HD22 A:ASN947 4.0 37.9 1.0 HE2 A:LYS963 4.2 37.3 1.0 O3' B:C2 4.2 47.5 1.0 O A:PHE986 4.3 34.4 1.0 NZ A:LYS739 4.3 40.6 1.0 CB A:LEU987 4.3 39.8 1.0 HE3 A:LYS739 4.3 40.6 1.0 OP3 B:U1 4.4 48.5 1.0 O5' B:U1 4.4 48.5 1.0 HE2 A:LYS739 4.4 40.6 1.0 HZ1 A:LYS963 4.4 37.3 1.0 C5' B:U1 4.5 48.5 1.0 HG3 A:GLN735 4.6 43.7 1.0 H5'' B:U1 4.6 48.5 1.0 CG A:GLN735 4.6 43.7 1.0 N A:LEU987 4.6 39.8 1.0 CE A:LYS739 4.6 40.6 1.0 HE22 A:GLN712 4.6 44.2 1.0 C5' B:U3 4.6 43.6 1.0 H5' B:U3 4.7 43.6 1.0 HE3 A:LYS963 4.7 37.3 1.0 O5' B:U3 4.7 43.6 1.0 OE1 A:GLN712 4.8 44.2 1.0 HZ2 A:LYS739 4.8 40.6 1.0 ND2 A:ASN947 4.8 37.9 1.0 CE A:LYS963 4.8 37.3 1.0 C A:PHE986 4.8 34.4 1.0 HZ3 A:LYS739 4.8 40.6 1.0 HG2 A:GLN735 4.9 43.7 1.0 OP2 B:U3 5.0 43.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Ephydatia Fluviatilis Piwia-Pirna-Target Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:54.4 occ:1.00 HD1 A:HIS962 1.5 44.0 1.0 OD2 A:ASP760 1.9 48.0 1.0 ND1 A:HIS962 2.1 44.0 1.0 HE1 A:HIS763 2.4 70.1 1.0 HE1 A:HIS962 2.4 44.0 1.0 OD1 A:ASP760 2.4 48.0 1.0 CG A:ASP760 2.4 48.0 1.0 CE1 A:HIS962 2.6 44.0 1.0 CE1 A:HIS763 3.1 70.1 1.0 HD1 A:HIS763 3.2 70.1 1.0 CG A:HIS962 3.4 44.0 1.0 ND1 A:HIS763 3.5 70.1 1.0 HB2 A:HIS962 3.8 44.0 1.0 NE2 A:HIS962 3.8 44.0 1.0 CB A:ASP760 3.9 48.0 1.0 HB3 A:ASP830 4.0 49.5 1.0 CG A:ASP830 4.1 49.5 1.0 OD1 A:ASP830 4.1 49.5 1.0 CB A:HIS962 4.2 44.0 1.0 OD2 A:ASP830 4.2 49.5 1.0 HB3 A:ASP760 4.2 48.0 1.0 HA A:HIS962 4.2 44.0 1.0 HB2 A:ASP760 4.2 48.0 1.0 NE2 A:HIS763 4.3 70.1 1.0 CD2 A:HIS962 4.3 44.0 1.0 OP1 C:A14 4.3 86.4 1.0 HA3 A:GLY831 4.4 59.0 1.0 H A:VAL761 4.5 53.3 1.0 CB A:ASP830 4.6 49.5 1.0 HA A:ASP760 4.7 48.0 1.0 CA A:HIS962 4.8 44.0 1.0 CG A:HIS763 4.8 70.1 1.0 O A:VAL761 4.8 53.3 1.0 CA A:ASP760 4.9 48.0 1.0 OP2 C:A14 5.0 86.4 1.0 HB3 A:HIS962 5.0 44.0 1.0

T.A.Anzelon, S.Chowdhury, S.M.Hughes, Y.Xiao, G.C.Lander, I.J.Macrae. Structural Basis For Pirna-Targeting To Be Published.