Magnesium in PDB 7ky6: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State:
7.6.2.1;

The binding sites of Magnesium atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State (pdb code 7ky6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State, PDB code: 7ky6:

Magnesium binding site 1 out of 1 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the Apo E1 State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2000 b:65.6 occ:1.00 OD1 A:ASP667 2.1 64.0 1.0 OD2 A:ASP1130 2.5 63.1 1.0 N A:GLY670 3.2 65.0 1.0 CG A:ASP667 3.3 64.0 1.0 OD2 A:ASP1134 3.4 74.0 1.0 CA A:GLY670 3.5 65.0 1.0 CG A:ASP1130 3.5 63.1 1.0 O A:ASP1130 4.0 63.1 1.0 OD1 A:ASP1130 4.0 63.1 1.0 OD2 A:ASP667 4.2 64.0 1.0 CB A:ASP667 4.2 64.0 1.0 C A:THR669 4.2 72.9 1.0 C A:GLY670 4.4 65.0 1.0 CB A:THR669 4.5 72.9 1.0 C A:ASP1130 4.5 63.1 1.0 N A:THR671 4.6 60.6 1.0 N A:THR669 4.6 72.9 1.0 CG A:ASP1134 4.6 74.0 1.0 CA A:THR669 4.7 72.9 1.0 N A:ASP1130 4.7 63.1 1.0 CB A:ASP1130 4.8 63.1 1.0 OG1 A:THR671 4.8 60.6 1.0 CA A:ASP1130 4.9 63.1 1.0

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163