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Magnesium in PDB 7l4j: Crystal Structure of Wt PPM1H Phosphatase

Enzymatic activity of Crystal Structure of Wt PPM1H Phosphatase

All present enzymatic activity of Crystal Structure of Wt PPM1H Phosphatase:
3.1.3.16;

Protein crystallography data

The structure of Crystal Structure of Wt PPM1H Phosphatase, PDB code: 7l4j was solved by A.R.Khan, D.Waschbusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.97 / 2.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.688, 101.105, 148.974, 90, 90, 90
R / Rfree (%) 19 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Wt PPM1H Phosphatase (pdb code 7l4j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Wt PPM1H Phosphatase, PDB code: 7l4j:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7l4j

Go back to Magnesium Binding Sites List in 7l4j
Magnesium binding site 1 out of 4 in the Crystal Structure of Wt PPM1H Phosphatase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Wt PPM1H Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg600

b:39.9
occ:1.00
 OD2 A:ASP498 1.9 50.2 1.0
OD2 A:ASP151 2.0 47.3 1.0
OD1 A:ASP437 2.1 48.5 1.0
O A:HOH712 2.1 43.2 1.0
O A:HOH731 2.2 46.8 1.0
O A:HOH707 2.2 43.6 1.0
CG A:ASP151 2.9 46.6 1.0
CG A:ASP498 3.0 47.8 1.0
CG A:ASP437 3.1 51.9 1.0
OD1 A:ASP151 3.2 46.6 1.0
OD1 A:ASP498 3.4 50.7 1.0
OD2 A:ASP437 3.5 56.2 1.0
MG A:MG601 3.7 46.1 1.0
N A:GLY438 4.0 44.3 1.0
O A:HOH721 4.1 45.2 1.0
O A:HOH747 4.3 48.7 1.0
CB A:ASP498 4.3 43.6 1.0
O A:HOH728 4.3 41.2 1.0
CB A:ASP151 4.3 46.8 1.0
O A:HOH708 4.3 44.8 1.0
O A:ASP499 4.3 47.3 1.0
OD1 A:ASP94 4.4 48.1 1.0
CB A:ASP437 4.5 43.0 1.0
N A:ASP437 4.5 42.8 1.0
C A:ASP437 4.7 43.2 1.0
CA A:ASP437 4.8 41.9 1.0
CA A:GLY438 4.8 44.3 1.0
CB A:THR436 4.8 43.0 1.0
NZ A:LYS88 4.9 67.4 1.0

Magnesium binding site 2 out of 4 in 7l4j

Go back to Magnesium Binding Sites List in 7l4j
Magnesium binding site 2 out of 4 in the Crystal Structure of Wt PPM1H Phosphatase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Wt PPM1H Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:46.1
occ:1.00
 OD1 A:ASP151 1.9 46.6 1.0
O A:HOH707 2.0 43.6 1.0
O A:GLY152 2.1 46.8 1.0
O A:HOH744 2.2 42.5 1.0
O A:HOH721 2.2 45.2 1.0
O A:HOH708 2.3 44.8 1.0
CG A:ASP151 3.1 46.6 1.0
C A:GLY152 3.3 45.1 1.0
OD2 A:ASP151 3.7 47.3 1.0
MG A:MG600 3.7 39.9 1.0
N A:GLY152 3.8 42.0 1.0
O A:HOH731 3.8 46.8 1.0
C A:ASP151 4.0 44.0 1.0
CA A:GLY152 4.2 42.3 1.0
OD1 A:ASP94 4.2 48.1 1.0
CB A:ASP151 4.3 46.8 1.0
O A:HOH735 4.3 48.8 1.0
N A:HIS153 4.3 46.3 1.0
OD1 A:ASP498 4.3 50.7 1.0
O A:HOH712 4.3 43.2 1.0
CA A:ASP151 4.4 47.6 1.0
OE1 A:GLU93 4.4 48.4 1.0
CB A:GLU93 4.4 46.8 1.0
O A:ASP151 4.5 41.9 1.0
CA A:HIS153 4.5 44.0 1.0
OD2 A:ASP499 4.5 46.4 1.0
CB A:HIS153 4.7 36.6 1.0
OD2 A:ASP498 4.8 50.2 1.0
O A:GLU93 4.9 47.9 1.0
O A:HOH747 4.9 48.7 1.0
C A:GLU93 4.9 48.3 1.0
NZ A:LYS88 5.0 67.4 1.0

Magnesium binding site 3 out of 4 in 7l4j

Go back to Magnesium Binding Sites List in 7l4j
Magnesium binding site 3 out of 4 in the Crystal Structure of Wt PPM1H Phosphatase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Wt PPM1H Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg600

b:51.9
occ:1.00
 OD1 B:ASP151 1.8 46.7 1.0
O B:HOH709 2.1 47.4 1.0
O B:GLY152 2.1 50.2 1.0
O B:HOH728 2.1 52.9 1.0
O B:HOH741 2.2 51.0 1.0
O B:HOH734 2.3 46.4 1.0
CG B:ASP151 3.0 44.7 1.0
C B:GLY152 3.3 46.2 1.0
OD2 B:ASP151 3.6 45.3 1.0
MG B:MG601 3.7 42.7 1.0
N B:GLY152 3.8 46.8 1.0
O B:HOH708 3.9 47.4 1.0
C B:ASP151 3.9 48.5 1.0
O B:HOH718 3.9 47.0 1.0
OD1 B:ASP94 4.1 52.3 1.0
CA B:GLY152 4.1 43.2 1.0
O B:HOH712 4.2 49.9 1.0
CB B:ASP151 4.2 41.3 1.0
O B:ASP151 4.2 49.7 1.0
N B:HIS153 4.3 46.4 1.0
CA B:ASP151 4.3 47.4 1.0
OD1 B:ASP498 4.3 53.8 1.0
OE1 B:GLU93 4.3 56.2 1.0
OD2 B:ASP499 4.3 49.7 1.0
CB B:GLU93 4.3 47.8 1.0
CA B:HIS153 4.4 49.2 1.0
CB B:HIS153 4.7 40.6 1.0
OD2 B:ASP498 4.8 53.0 1.0
C B:GLU93 4.8 52.4 1.0
NZ B:LYS88 4.9 75.5 1.0
O B:GLU93 4.9 51.1 1.0

Magnesium binding site 4 out of 4 in 7l4j

Go back to Magnesium Binding Sites List in 7l4j
Magnesium binding site 4 out of 4 in the Crystal Structure of Wt PPM1H Phosphatase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Wt PPM1H Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:42.7
occ:1.00
 OD2 B:ASP151 1.9 45.3 1.0
OD1 B:ASP437 2.0 51.6 1.0
O B:HOH709 2.0 47.4 1.0
O B:HOH708 2.0 47.4 1.0
OD2 B:ASP498 2.0 53.0 1.0
O B:HOH718 2.1 47.0 1.0
CG B:ASP151 2.9 44.7 1.0
CG B:ASP437 2.9 50.1 1.0
CG B:ASP498 3.0 51.4 1.0
OD2 B:ASP437 3.1 50.5 1.0
OD1 B:ASP151 3.2 46.7 1.0
OD1 B:ASP498 3.3 53.8 1.0
MG B:MG600 3.7 51.9 1.0
O B:HOH741 3.9 51.0 1.0
N B:GLY438 4.1 41.6 1.0
O B:HOH727 4.2 45.0 1.0
CB B:ASP151 4.2 41.3 1.0
CB B:ASP498 4.3 47.9 1.0
CB B:ASP437 4.3 40.8 1.0
O B:HOH728 4.4 52.9 1.0
O B:ASP499 4.4 54.6 1.0
N B:ASP437 4.5 39.2 1.0
OD1 B:ASP94 4.6 52.3 1.0
C B:ASP437 4.8 47.2 1.0
CA B:ASP437 4.8 42.5 1.0
CA B:GLY438 4.8 46.9 1.0
CB B:THR436 4.9 42.9 1.0
NZ B:LYS88 4.9 75.5 1.0
OG1 B:THR436 4.9 45.3 1.0

Reference:

A.R.Khan, D.Waschbusch. Crystal Structure of Wt PPM1H Phosphatase To Be Published.
Page generated: Wed Oct 2 23:18:05 2024

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