Magnesium in PDB 7ljl: Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Protein crystallography data
The structure of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp, PDB code: 7ljl
was solved by
A.Govande,
B.Lowey,
J.B.Eaglesham,
A.W.Whiteley,
P.J.Kranzusch,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.87 /
1.45
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
66.074,
101.372,
68.364,
90,
117.61,
90
|
R / Rfree (%)
|
15.2 /
16.5
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
(pdb code 7ljl). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp, PDB code: 7ljl:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 1 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:20.3
occ:1.00
|
OD1
|
A:ASP71
|
2.3
|
16.1
|
1.0
|
OD2
|
A:ASP121
|
2.4
|
33.0
|
1.0
|
O
|
A:HOH823
|
2.4
|
24.7
|
1.0
|
O1A
|
A:ATP405
|
2.4
|
15.2
|
1.0
|
O
|
A:HOH687
|
2.5
|
32.8
|
1.0
|
OD2
|
A:ASP69
|
2.5
|
16.7
|
1.0
|
OD1
|
A:ASP69
|
2.9
|
20.6
|
1.0
|
CG
|
A:ASP69
|
3.0
|
19.6
|
1.0
|
CG
|
A:ASP71
|
3.3
|
15.9
|
1.0
|
CG
|
A:ASP121
|
3.4
|
28.5
|
1.0
|
MG
|
A:MG402
|
3.4
|
16.2
|
1.0
|
HB3
|
A:ASP121
|
3.5
|
23.9
|
1.0
|
OD2
|
A:ASP71
|
3.6
|
16.6
|
1.0
|
PA
|
A:ATP405
|
3.6
|
15.3
|
1.0
|
HB2
|
A:ASP121
|
3.8
|
23.9
|
1.0
|
CB
|
A:ASP121
|
3.8
|
19.9
|
1.0
|
H5'1
|
A:ATP405
|
3.8
|
18.3
|
1.0
|
H5'2
|
A:ATP405
|
3.9
|
18.3
|
1.0
|
O
|
A:HOH666
|
4.1
|
25.8
|
1.0
|
O5'
|
A:ATP405
|
4.1
|
14.5
|
1.0
|
O2A
|
A:ATP405
|
4.2
|
17.7
|
1.0
|
C5'
|
A:ATP405
|
4.2
|
15.2
|
1.0
|
O
|
A:HOH791
|
4.4
|
40.2
|
1.0
|
OD1
|
A:ASP121
|
4.4
|
27.6
|
1.0
|
O
|
A:HOH533
|
4.4
|
40.0
|
1.0
|
O
|
A:HOH718
|
4.4
|
17.5
|
1.0
|
O
|
A:HOH786
|
4.4
|
36.5
|
1.0
|
O
|
A:HOH846
|
4.4
|
43.8
|
1.0
|
CB
|
A:ASP69
|
4.5
|
22.9
|
1.0
|
O1G
|
A:ATP405
|
4.5
|
18.4
|
1.0
|
CB
|
A:ASP71
|
4.6
|
14.7
|
1.0
|
HB3
|
A:ASP69
|
4.8
|
27.4
|
1.0
|
HB2
|
A:ASP69
|
4.8
|
27.4
|
1.0
|
HA
|
A:ASP71
|
4.8
|
17.1
|
1.0
|
HB3
|
A:ASP71
|
4.8
|
17.6
|
1.0
|
O2B
|
A:ATP405
|
4.9
|
13.9
|
1.0
|
O3A
|
A:ATP405
|
5.0
|
15.1
|
1.0
|
HN62
|
A:ATP406
|
5.0
|
20.8
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 2 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:16.2
occ:1.00
|
O2B
|
A:ATP405
|
2.0
|
13.9
|
1.0
|
OD2
|
A:ASP69
|
2.0
|
16.7
|
1.0
|
O1G
|
A:ATP405
|
2.1
|
18.4
|
1.0
|
O1A
|
A:ATP405
|
2.1
|
15.2
|
1.0
|
OD2
|
A:ASP71
|
2.1
|
16.6
|
1.0
|
O
|
A:HOH588
|
2.1
|
16.1
|
1.0
|
CG
|
A:ASP71
|
3.1
|
15.9
|
1.0
|
PB
|
A:ATP405
|
3.1
|
15.6
|
1.0
|
PA
|
A:ATP405
|
3.3
|
15.3
|
1.0
|
CG
|
A:ASP69
|
3.3
|
19.6
|
1.0
|
H5'2
|
A:ATP405
|
3.3
|
18.3
|
1.0
|
PG
|
A:ATP405
|
3.3
|
18.1
|
1.0
|
MG
|
A:MG401
|
3.4
|
20.3
|
1.0
|
OD1
|
A:ASP71
|
3.4
|
16.1
|
1.0
|
O3A
|
A:ATP405
|
3.5
|
15.1
|
1.0
|
H
|
A:SER53
|
3.6
|
17.0
|
1.0
|
O3B
|
A:ATP405
|
3.6
|
16.9
|
1.0
|
HB3
|
A:ASP69
|
3.6
|
27.4
|
1.0
|
O
|
A:HOH666
|
3.9
|
25.8
|
1.0
|
OG
|
A:SER53
|
4.0
|
16.0
|
1.0
|
CB
|
A:ASP69
|
4.0
|
22.9
|
1.0
|
O3G
|
A:ATP405
|
4.0
|
20.2
|
1.0
|
O
|
A:HOH648
|
4.1
|
15.8
|
1.0
|
HA3
|
A:GLY52
|
4.1
|
18.1
|
1.0
|
HG
|
A:SER53
|
4.2
|
19.2
|
1.0
|
O
|
A:ASP69
|
4.2
|
19.1
|
1.0
|
C5'
|
A:ATP405
|
4.2
|
15.2
|
1.0
|
OD1
|
A:ASP69
|
4.3
|
20.6
|
1.0
|
O5'
|
A:ATP405
|
4.3
|
14.5
|
1.0
|
N
|
A:SER53
|
4.4
|
14.2
|
1.0
|
O2A
|
A:ATP405
|
4.4
|
17.7
|
1.0
|
CB
|
A:ASP71
|
4.5
|
14.7
|
1.0
|
H
|
A:ASP71
|
4.5
|
18.5
|
1.0
|
O1B
|
A:ATP405
|
4.5
|
15.0
|
1.0
|
HB2
|
A:ASP71
|
4.5
|
17.6
|
1.0
|
O2G
|
A:ATP405
|
4.6
|
18.7
|
1.0
|
O
|
A:HOH823
|
4.6
|
24.7
|
1.0
|
H5'1
|
A:ATP405
|
4.6
|
18.3
|
1.0
|
C
|
A:ASP69
|
4.6
|
17.3
|
1.0
|
HB3
|
A:SER53
|
4.7
|
19.2
|
1.0
|
HB2
|
A:ASP69
|
4.7
|
27.4
|
1.0
|
CB
|
A:SER53
|
4.9
|
16.0
|
1.0
|
CA
|
A:GLY52
|
4.9
|
15.1
|
1.0
|
N
|
A:ASP71
|
4.9
|
15.4
|
1.0
|
HA2
|
A:GLY52
|
4.9
|
18.1
|
1.0
|
H
|
A:ILE54
|
5.0
|
18.1
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 3 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:21.1
occ:1.00
|
O1G
|
A:ATP406
|
2.0
|
23.6
|
1.0
|
O1B
|
A:ATP406
|
2.0
|
19.8
|
1.0
|
O
|
A:HOH658
|
2.0
|
25.2
|
1.0
|
OD1
|
A:ASP196
|
2.1
|
18.3
|
1.0
|
O
|
A:HOH549
|
2.1
|
24.9
|
1.0
|
O
|
A:HOH702
|
2.1
|
23.1
|
1.0
|
CG
|
A:ASP196
|
3.1
|
17.4
|
1.0
|
PB
|
A:ATP406
|
3.2
|
18.1
|
1.0
|
HH21
|
A:ARG307
|
3.3
|
27.7
|
1.0
|
PG
|
A:ATP406
|
3.3
|
25.4
|
1.0
|
OD2
|
A:ASP196
|
3.4
|
18.9
|
1.0
|
O3B
|
A:ATP406
|
3.5
|
19.5
|
1.0
|
O2B
|
A:ATP406
|
3.9
|
17.3
|
1.0
|
O
|
A:HOH689
|
3.9
|
43.5
|
1.0
|
NH2
|
A:ARG307
|
4.0
|
23.1
|
1.0
|
O
|
A:HOH654
|
4.0
|
26.3
|
1.0
|
O2G
|
A:ATP406
|
4.1
|
40.0
|
1.0
|
H
|
A:ARG197
|
4.2
|
20.8
|
1.0
|
HH22
|
A:ARG307
|
4.2
|
27.7
|
1.0
|
O
|
A:HOH629
|
4.2
|
24.1
|
1.0
|
O
|
A:HOH643
|
4.2
|
47.6
|
1.0
|
O3G
|
A:ATP406
|
4.4
|
29.6
|
1.0
|
O
|
A:HOH845
|
4.4
|
37.8
|
1.0
|
O3A
|
A:ATP406
|
4.4
|
16.9
|
1.0
|
CB
|
A:ASP196
|
4.4
|
17.3
|
1.0
|
HB2
|
A:ASP196
|
4.5
|
20.7
|
1.0
|
O
|
A:HOH816
|
4.6
|
24.9
|
1.0
|
HB3
|
A:ARG197
|
4.7
|
23.5
|
1.0
|
HE
|
A:ARG307
|
4.8
|
25.7
|
1.0
|
H
|
A:GLU198
|
4.8
|
21.4
|
1.0
|
HA
|
A:ASP196
|
4.8
|
19.2
|
1.0
|
HD2
|
A:LYS199
|
4.9
|
37.7
|
1.0
|
N
|
A:ARG197
|
4.9
|
17.4
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 4 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:19.9
occ:1.00
|
O
|
A:ASN258
|
2.3
|
17.0
|
1.0
|
O
|
A:HOH590
|
2.4
|
18.3
|
1.0
|
O
|
A:HOH808
|
2.4
|
24.9
|
1.0
|
O
|
A:HOH608
|
2.5
|
19.7
|
1.0
|
O
|
A:LEU260
|
2.6
|
18.0
|
1.0
|
HZ1
|
A:LYS217
|
3.2
|
21.8
|
1.0
|
HH12
|
A:ARG281
|
3.3
|
23.4
|
1.0
|
C
|
A:ASN258
|
3.4
|
15.7
|
1.0
|
HZ3
|
A:LYS217
|
3.5
|
21.8
|
1.0
|
C
|
A:LEU260
|
3.5
|
16.8
|
1.0
|
HA
|
A:ASP261
|
3.6
|
20.6
|
1.0
|
HA
|
A:ASN258
|
3.7
|
19.5
|
1.0
|
HH22
|
A:ARG281
|
3.8
|
25.6
|
1.0
|
NZ
|
A:LYS217
|
3.8
|
18.1
|
1.0
|
O
|
A:GLY257
|
3.8
|
17.6
|
1.0
|
C
|
A:ALA259
|
4.1
|
18.2
|
1.0
|
NH1
|
A:ARG281
|
4.1
|
19.5
|
1.0
|
CA
|
A:ASN258
|
4.1
|
16.3
|
1.0
|
N
|
A:LEU260
|
4.2
|
17.0
|
1.0
|
O
|
A:ALA259
|
4.2
|
18.4
|
1.0
|
N
|
A:ASP261
|
4.3
|
16.7
|
1.0
|
N
|
A:ALA259
|
4.3
|
16.4
|
1.0
|
CA
|
A:ASP261
|
4.3
|
17.1
|
1.0
|
HZ2
|
A:LYS217
|
4.4
|
21.8
|
1.0
|
H
|
A:LEU260
|
4.4
|
20.4
|
1.0
|
HA
|
A:ALA259
|
4.5
|
20.3
|
1.0
|
CA
|
A:LEU260
|
4.5
|
17.0
|
1.0
|
HE2
|
A:LYS217
|
4.5
|
20.6
|
1.0
|
NH2
|
A:ARG281
|
4.5
|
21.3
|
1.0
|
CA
|
A:ALA259
|
4.6
|
16.9
|
1.0
|
HH11
|
A:ARG281
|
4.6
|
23.4
|
1.0
|
OD1
|
A:ASP261
|
4.6
|
21.5
|
1.0
|
C
|
A:GLY257
|
4.7
|
17.8
|
1.0
|
CE
|
A:LYS217
|
4.8
|
17.1
|
1.0
|
CZ
|
A:ARG281
|
4.8
|
19.9
|
1.0
|
N
|
A:ASN258
|
4.9
|
17.0
|
1.0
|
H
|
A:ASN262
|
5.0
|
21.8
|
1.0
|
HB3
|
A:LEU260
|
5.0
|
20.7
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 5 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:22.1
occ:1.00
|
OD1
|
B:ASP71
|
2.3
|
18.7
|
1.0
|
O
|
B:HOH1119
|
2.3
|
26.3
|
1.0
|
OD2
|
B:ASP121
|
2.4
|
33.5
|
1.0
|
O1A
|
B:ATP405
|
2.4
|
17.2
|
1.0
|
O
|
B:HOH1103
|
2.5
|
33.8
|
1.0
|
OD2
|
B:ASP69
|
2.5
|
19.2
|
1.0
|
OD1
|
B:ASP69
|
3.0
|
22.3
|
1.0
|
CG
|
B:ASP69
|
3.1
|
21.7
|
1.0
|
CG
|
B:ASP71
|
3.3
|
17.0
|
1.0
|
MG
|
B:MG402
|
3.4
|
18.4
|
1.0
|
CG
|
B:ASP121
|
3.4
|
28.1
|
1.0
|
OD2
|
B:ASP71
|
3.5
|
18.4
|
1.0
|
PA
|
B:ATP405
|
3.6
|
17.9
|
1.0
|
HB3
|
B:ASP121
|
3.7
|
26.6
|
1.0
|
H5'2
|
B:ATP405
|
3.8
|
21.4
|
1.0
|
H5'1
|
B:ATP405
|
3.9
|
21.4
|
1.0
|
CB
|
B:ASP121
|
4.0
|
22.1
|
1.0
|
HB2
|
B:ASP121
|
4.0
|
26.6
|
1.0
|
O
|
B:HOH977
|
4.0
|
27.7
|
1.0
|
O5'
|
B:ATP405
|
4.1
|
17.6
|
1.0
|
O2A
|
B:ATP405
|
4.1
|
19.6
|
1.0
|
C5'
|
B:ATP405
|
4.1
|
17.8
|
1.0
|
O
|
B:HOH1102
|
4.2
|
35.1
|
1.0
|
O
|
B:HOH1142
|
4.3
|
43.9
|
1.0
|
O
|
B:HOH1107
|
4.3
|
43.9
|
1.0
|
OD1
|
B:ASP121
|
4.4
|
30.9
|
1.0
|
O
|
B:HOH1025
|
4.4
|
18.9
|
1.0
|
CB
|
B:ASP69
|
4.5
|
23.1
|
1.0
|
O1G
|
B:ATP405
|
4.5
|
20.0
|
1.0
|
CB
|
B:ASP71
|
4.6
|
16.5
|
1.0
|
HB3
|
B:ASP69
|
4.8
|
27.8
|
1.0
|
HB2
|
B:ASP69
|
4.8
|
27.8
|
1.0
|
HA
|
B:ASP71
|
4.8
|
20.2
|
1.0
|
HN62
|
B:ATP406
|
4.8
|
21.7
|
1.0
|
HB3
|
B:ASP71
|
4.8
|
19.8
|
1.0
|
O3A
|
B:ATP405
|
4.9
|
19.1
|
1.0
|
O2B
|
B:ATP405
|
4.9
|
16.6
|
1.0
|
HN61
|
B:ATP406
|
5.0
|
21.7
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 6 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:18.4
occ:1.00
|
O1G
|
B:ATP405
|
2.0
|
20.0
|
1.0
|
OD2
|
B:ASP69
|
2.0
|
19.2
|
1.0
|
O2B
|
B:ATP405
|
2.1
|
16.6
|
1.0
|
O1A
|
B:ATP405
|
2.1
|
17.2
|
1.0
|
O
|
B:HOH890
|
2.1
|
17.2
|
1.0
|
OD2
|
B:ASP71
|
2.1
|
18.4
|
1.0
|
PB
|
B:ATP405
|
3.1
|
17.5
|
1.0
|
CG
|
B:ASP71
|
3.2
|
17.0
|
1.0
|
PG
|
B:ATP405
|
3.3
|
20.7
|
1.0
|
CG
|
B:ASP69
|
3.3
|
21.7
|
1.0
|
PA
|
B:ATP405
|
3.3
|
17.9
|
1.0
|
H5'1
|
B:ATP405
|
3.3
|
21.4
|
1.0
|
MG
|
B:MG401
|
3.4
|
22.1
|
1.0
|
O3A
|
B:ATP405
|
3.5
|
19.1
|
1.0
|
HB3
|
B:ASP69
|
3.5
|
27.8
|
1.0
|
OD1
|
B:ASP71
|
3.5
|
18.7
|
1.0
|
O3B
|
B:ATP405
|
3.6
|
19.1
|
1.0
|
H
|
B:SER53
|
3.6
|
19.7
|
1.0
|
O
|
B:HOH977
|
3.8
|
27.7
|
1.0
|
CB
|
B:ASP69
|
3.9
|
23.1
|
1.0
|
O3G
|
B:ATP405
|
4.0
|
23.1
|
1.0
|
OG
|
B:SER53
|
4.0
|
18.1
|
1.0
|
HG
|
B:SER53
|
4.1
|
21.8
|
1.0
|
O
|
B:HOH906
|
4.1
|
16.2
|
1.0
|
HA3
|
B:GLY52
|
4.2
|
21.1
|
1.0
|
O
|
B:ASP69
|
4.2
|
22.8
|
1.0
|
C5'
|
B:ATP405
|
4.2
|
17.8
|
1.0
|
OD1
|
B:ASP69
|
4.3
|
22.3
|
1.0
|
O5'
|
B:ATP405
|
4.3
|
17.6
|
1.0
|
O2A
|
B:ATP405
|
4.4
|
19.6
|
1.0
|
N
|
B:SER53
|
4.4
|
16.4
|
1.0
|
CB
|
B:ASP71
|
4.5
|
16.5
|
1.0
|
O1B
|
B:ATP405
|
4.5
|
17.1
|
1.0
|
O2G
|
B:ATP405
|
4.5
|
20.3
|
1.0
|
H
|
B:ASP71
|
4.5
|
19.4
|
1.0
|
O
|
B:HOH1119
|
4.5
|
26.3
|
1.0
|
HB2
|
B:ASP71
|
4.6
|
19.8
|
1.0
|
HB2
|
B:ASP69
|
4.6
|
27.8
|
1.0
|
HB3
|
B:SER53
|
4.6
|
22.1
|
1.0
|
C
|
B:ASP69
|
4.7
|
20.6
|
1.0
|
H5'2
|
B:ATP405
|
4.7
|
21.4
|
1.0
|
CB
|
B:SER53
|
4.8
|
18.4
|
1.0
|
N
|
B:ASP71
|
4.9
|
16.1
|
1.0
|
CA
|
B:GLY52
|
5.0
|
17.6
|
1.0
|
HA2
|
B:GLY52
|
5.0
|
21.1
|
1.0
|
H
|
B:ILE54
|
5.0
|
21.7
|
1.0
|
CA
|
B:ASP69
|
5.0
|
23.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 7 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg403
b:23.2
occ:1.00
|
O1G
|
B:ATP406
|
1.9
|
27.0
|
1.0
|
O1B
|
B:ATP406
|
2.0
|
21.2
|
1.0
|
OD1
|
B:ASP196
|
2.1
|
21.4
|
1.0
|
O
|
B:HOH832
|
2.1
|
29.2
|
1.0
|
O
|
B:HOH996
|
2.1
|
32.2
|
1.0
|
O
|
B:HOH997
|
2.2
|
26.5
|
1.0
|
CG
|
B:ASP196
|
3.1
|
20.7
|
1.0
|
PB
|
B:ATP406
|
3.2
|
19.6
|
1.0
|
HH21
|
B:ARG307
|
3.2
|
28.7
|
1.0
|
PG
|
B:ATP406
|
3.2
|
31.0
|
1.0
|
OD2
|
B:ASP196
|
3.4
|
21.5
|
1.0
|
O3B
|
B:ATP406
|
3.5
|
22.0
|
1.0
|
O2B
|
B:ATP406
|
3.9
|
19.9
|
1.0
|
NH2
|
B:ARG307
|
3.9
|
23.9
|
1.0
|
O
|
B:HOH937
|
4.0
|
26.3
|
1.0
|
O
|
B:HOH1077
|
4.0
|
51.2
|
1.0
|
O2G
|
B:ATP406
|
4.1
|
45.5
|
1.0
|
HH22
|
B:ARG307
|
4.1
|
28.7
|
1.0
|
H
|
B:ARG197
|
4.1
|
21.4
|
1.0
|
O
|
B:HOH901
|
4.3
|
26.0
|
1.0
|
O
|
B:HOH1137
|
4.3
|
42.1
|
1.0
|
O3G
|
B:ATP406
|
4.3
|
37.4
|
1.0
|
O3A
|
B:ATP406
|
4.4
|
17.2
|
1.0
|
CB
|
B:ASP196
|
4.4
|
20.3
|
1.0
|
O
|
B:HOH1153
|
4.5
|
45.2
|
1.0
|
HB2
|
B:ASP196
|
4.5
|
24.3
|
1.0
|
H
|
B:GLU198
|
4.7
|
24.4
|
1.0
|
HB3
|
B:ARG197
|
4.7
|
25.8
|
1.0
|
O
|
B:HOH1099
|
4.7
|
26.9
|
1.0
|
HE
|
B:ARG307
|
4.7
|
27.5
|
1.0
|
HA
|
B:ASP196
|
4.8
|
21.9
|
1.0
|
N
|
B:ARG197
|
4.8
|
17.9
|
1.0
|
HD2
|
B:LYS199
|
4.9
|
39.6
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 7ljl
Go back to
Magnesium Binding Sites List in 7ljl
Magnesium binding site 8 out
of 8 in the Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of the Enterobacter Cloacae Cd-Ntase Cdnd in Complex with Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg404
b:21.4
occ:1.00
|
O
|
B:ASN258
|
2.3
|
17.3
|
1.0
|
O
|
B:HOH1109
|
2.4
|
24.4
|
1.0
|
O
|
B:HOH868
|
2.5
|
18.1
|
1.0
|
O
|
B:HOH892
|
2.5
|
18.9
|
1.0
|
O
|
B:LEU260
|
2.6
|
17.7
|
1.0
|
HZ1
|
B:LYS217
|
3.1
|
22.7
|
1.0
|
HH12
|
B:ARG281
|
3.3
|
23.5
|
1.0
|
HZ3
|
B:LYS217
|
3.4
|
22.7
|
1.0
|
C
|
B:ASN258
|
3.4
|
17.2
|
1.0
|
HA
|
B:ASP261
|
3.6
|
21.3
|
1.0
|
C
|
B:LEU260
|
3.6
|
20.8
|
1.0
|
NZ
|
B:LYS217
|
3.7
|
18.9
|
1.0
|
HA
|
B:ASN258
|
3.7
|
21.8
|
1.0
|
HH22
|
B:ARG281
|
3.8
|
25.4
|
1.0
|
O
|
B:GLY257
|
3.8
|
18.8
|
1.0
|
NH1
|
B:ARG281
|
4.1
|
19.6
|
1.0
|
C
|
B:ALA259
|
4.1
|
17.4
|
1.0
|
CA
|
B:ASN258
|
4.2
|
18.1
|
1.0
|
N
|
B:LEU260
|
4.2
|
18.4
|
1.0
|
O
|
B:ALA259
|
4.2
|
19.0
|
1.0
|
HZ2
|
B:LYS217
|
4.3
|
22.7
|
1.0
|
N
|
B:ASP261
|
4.3
|
18.9
|
1.0
|
CA
|
B:ASP261
|
4.4
|
17.8
|
1.0
|
N
|
B:ALA259
|
4.4
|
17.9
|
1.0
|
H
|
B:LEU260
|
4.5
|
22.1
|
1.0
|
NH2
|
B:ARG281
|
4.5
|
21.1
|
1.0
|
HE2
|
B:LYS217
|
4.5
|
21.4
|
1.0
|
CA
|
B:LEU260
|
4.5
|
19.1
|
1.0
|
HA
|
B:ALA259
|
4.6
|
22.0
|
1.0
|
OD1
|
B:ASP261
|
4.6
|
23.6
|
1.0
|
CA
|
B:ALA259
|
4.6
|
18.3
|
1.0
|
HH11
|
B:ARG281
|
4.7
|
23.5
|
1.0
|
CE
|
B:LYS217
|
4.7
|
17.8
|
1.0
|
CZ
|
B:ARG281
|
4.8
|
19.7
|
1.0
|
C
|
B:GLY257
|
4.8
|
18.2
|
1.0
|
H
|
B:ASN262
|
5.0
|
22.4
|
1.0
|
N
|
B:ASN258
|
5.0
|
16.9
|
1.0
|
|
Reference:
A.A.Govande,
B.Duncan-Lowey,
J.B.Eaglesham,
A.T.Whiteley,
P.J.Kranzusch.
Molecular Basis of Cd-Ntase Nucleotide Selection in Cbass Anti-Phage Defense Cell Rep 2021.
ISSN: ESSN 2211-1247
Page generated: Wed Oct 2 23:25:36 2024
|