Magnesium in PDB 7lxr: Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp

The structure of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp, PDB code: 7lxr was solved by D.K.Worthylake, E.J.Wojcik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.11 / 1.74
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.692, 50.813, 93.344, 78.53, 77.87, 73.2
R / Rfree (%)	18.5 / 22.4

The structure of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp also contains other interesting chemical elements:

Iodine

(I)

2 atoms

The binding sites of Magnesium atom in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp (pdb code 7lxr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp, PDB code: 7lxr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:10.3 occ:1.00 HG1 A:THR110 1.8 9.8 0.0 O1B A:ANP403 1.9 9.1 1.0 HG A:SER229 2.0 8.8 0.0 O2G A:ANP403 2.1 8.2 1.0 O A:HOH555 2.1 9.7 1.0 O A:HOH545 2.1 9.1 1.0 OG1 A:THR110 2.1 9.8 1.0 OG A:SER229 2.2 11.2 1.0 H A:SER229 2.9 12.5 1.0 HB2 A:SER229 3.0 11.8 1.0 HB A:THR110 3.1 10.0 1.0 CB A:SER229 3.1 11.9 1.0 PB A:ANP403 3.2 8.6 1.0 CB A:THR110 3.2 9.9 1.0 PG A:ANP403 3.2 9.1 1.0 H A:THR110 3.3 9.7 1.0 N3B A:ANP403 3.4 9.4 1.0 N A:SER229 3.7 12.4 1.0 HB2 A:LYS109 3.8 9.5 1.0 N A:THR110 3.8 9.6 1.0 HB3 A:SER229 3.8 11.8 1.0 HNB1 A:ANP403 3.9 9.1 1.0 HE2 A:LYS109 3.9 9.6 1.0 CA A:SER229 4.0 12.4 1.0 O3G A:ANP403 4.0 11.6 1.0 CA A:THR110 4.1 10.0 1.0 OD2 A:ASP261 4.1 12.8 1.0 HG22 A:THR110 4.1 10.0 1.0 O1A A:ANP403 4.2 11.6 1.0 O3A A:ANP403 4.2 11.3 1.0 OD1 A:ASP261 4.2 12.0 1.0 O2B A:ANP403 4.2 9.1 1.0 CG2 A:THR110 4.2 9.9 1.0 HA A:SER228 4.3 13.9 1.0 O1G A:ANP403 4.4 11.1 1.0 O A:HOH522 4.4 18.1 1.0 HA A:THR110 4.4 9.9 1.0 HA A:SER229 4.5 12.4 1.0 CG A:ASP261 4.6 11.8 1.0 HA A:ALA263 4.6 11.9 1.0 O A:GLN227 4.6 14.8 1.0 PA A:ANP403 4.6 10.7 1.0 O A:LEU262 4.6 11.4 1.0 CB A:LYS109 4.7 9.5 1.0 HG23 A:THR110 4.7 9.9 1.0 C A:SER228 4.7 13.4 1.0 HZ2 A:LYS109 4.8 9.7 1.0 HB3 A:LYS109 4.8 9.5 1.0 CE A:LYS109 4.8 9.5 1.0 C A:LYS109 4.8 9.6 1.0 O2A A:ANP403 4.9 13.1 1.0 O A:HOH570 4.9 24.1 1.0 H A:LYS109 4.9 10.0 1.0 CA A:SER228 5.0 14.1 1.0 HG21 A:THR110 5.0 10.0 1.0

Magnesium binding site 2 out of 2 in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:22.6 occ:1.00 HG1 B:THR110 1.8 20.8 0.0 O1B B:ANP403 1.8 20.8 1.0 O B:HOH530 2.0 20.2 1.0 O2G B:ANP403 2.1 23.1 1.0 HG B:SER229 2.1 18.9 0.0 OG1 B:THR110 2.1 20.3 1.0 O B:HOH554 2.2 21.5 1.0 OG B:SER229 2.2 19.4 1.0 H B:SER229 2.9 23.1 1.0 HB B:THR110 3.0 19.7 1.0 PB B:ANP403 3.1 20.2 1.0 CB B:THR110 3.1 19.1 1.0 HB2 B:SER229 3.2 20.4 1.0 PG B:ANP403 3.2 22.5 1.0 CB B:SER229 3.2 20.4 1.0 H B:THR110 3.3 18.6 1.0 N3B B:ANP403 3.3 19.4 1.0 N B:SER229 3.7 22.7 1.0 HB2 B:LYS109 3.8 19.3 1.0 HNB1 B:ANP403 3.8 20.3 1.0 N B:THR110 3.8 18.0 1.0 HE2 B:LYS109 3.9 20.6 1.0 HB3 B:SER229 4.0 20.5 1.0 O3G B:ANP403 4.0 22.1 1.0 HG22 B:THR110 4.0 20.0 1.0 CA B:THR110 4.1 19.0 1.0 CA B:SER229 4.1 22.4 1.0 OD2 B:ASP261 4.1 21.2 1.0 O3A B:ANP403 4.1 20.7 1.0 O1A B:ANP403 4.2 21.6 1.0 OD1 B:ASP261 4.2 23.1 1.0 O2B B:ANP403 4.2 22.9 1.0 CG2 B:THR110 4.2 20.2 1.0 HA B:SER228 4.3 27.0 1.0 HA B:THR110 4.4 18.7 1.0 O1G B:ANP403 4.4 23.5 1.0 O B:HOH526 4.4 41.4 1.0 O B:GLN227 4.5 30.3 1.0 CG B:ASP261 4.5 22.1 1.0 PA B:ANP403 4.5 23.6 1.0 HA B:SER229 4.6 22.4 1.0 O B:LEU262 4.7 21.1 1.0 CB B:LYS109 4.7 19.4 1.0 HG23 B:THR110 4.7 19.7 1.0 C B:SER228 4.7 26.1 1.0 HA B:ALA263 4.8 23.6 1.0 O2A B:ANP403 4.8 25.8 1.0 HB3 B:LYS109 4.8 19.1 1.0 CE B:LYS109 4.8 21.0 1.0 HZ2 B:LYS109 4.9 21.2 1.0 C B:LYS109 4.9 19.0 1.0 HZ3 B:LYS109 4.9 21.1 1.0 H B:LYS109 4.9 19.8 1.0 HG21 B:THR110 4.9 19.9 1.0

E.J.Wojcik, D.K.Worthylake. Crystal Structure of the KLP61F Motor Domain Bound to Amppnp To Be Published.