Magnesium in PDB 7m76: Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I

All present enzymatic activity of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I:
1.97.1.12;

The structure of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I, PDB code: 7m76 was solved by S.M.Keable, P.S.Simon, A.Kolsch, J.Kern, V.K.Yachandra, A.Zouni, J.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.23 / 3.00
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	284.269, 284.269, 165.746, 90, 90, 120
R / Rfree (%)	26.8 / 27.8

The structure of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Iron	(Fe)	12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 96;

Binding sites:

The binding sites of Magnesium atom in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I (pdb code 7m76). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 96 binding sites of Magnesium where determined in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I, PDB code: 7m76:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:49.9 occ:1.00 MG A:CL0801 0.0 49.9 1.0 NB A:CL0801 2.0 39.7 1.0 ND A:CL0801 2.0 39.7 1.0 NE2 A:HIS680 2.1 54.4 1.0 NA A:CL0801 2.1 41.4 1.0 NC A:CL0801 2.1 41.9 1.0 CE1 A:HIS680 2.9 43.8 1.0 HAB B:CLA3003 2.9 57.4 1.0 HE1 A:HIS680 2.9 59.5 1.0 C4D A:CL0801 2.9 40.0 1.0 C1B A:CL0801 3.0 41.9 1.0 C4A A:CL0801 3.0 34.8 1.0 C4B A:CL0801 3.1 40.8 1.0 C1C A:CL0801 3.1 38.4 1.0 C4C A:CL0801 3.1 40.0 1.0 C1D A:CL0801 3.1 43.4 1.0 C1A A:CL0801 3.2 48.3 1.0 CD2 A:HIS680 3.2 52.4 1.0 CHB A:CL0801 3.4 31.8 1.0 CHC A:CL0801 3.5 43.0 1.0 CHA A:CL0801 3.5 48.6 1.0 HD2 A:HIS680 3.5 69.9 1.0 CHD A:CL0801 3.5 37.7 1.0 CAB B:CLA3003 3.7 42.0 1.0 C3B B:CLA3003 3.8 34.7 1.0 ND1 A:HIS680 4.0 33.5 1.0 HHC B:CLA3003 4.1 64.2 1.0 C4B B:CLA3003 4.1 34.2 1.0 HG21 A:THR742 4.2 68.7 1.0 CHC B:CLA3003 4.2 47.7 1.0 CG A:HIS680 4.2 43.7 1.0 C3D A:CL0801 4.3 46.0 1.0 C2B A:CL0801 4.3 38.2 1.0 C3B A:CL0801 4.3 35.4 1.0 C2D A:CL0801 4.3 54.0 1.0 C2C A:CL0801 4.4 35.4 1.0 C3A A:CL0801 4.4 43.5 1.0 C3C A:CL0801 4.4 46.3 1.0 HED3 A:CLA856 4.4 66.0 1.0 H4 A:CL0801 4.4 60.6 1.0 C2A A:CL0801 4.5 44.3 1.0 H1 A:CL0801 4.5 45.2 1.0 C2B B:CLA3003 4.5 35.4 1.0 H2 A:CL0801 4.6 58.6 1.0 HMB2 B:CLA3003 4.6 62.0 1.0 H3 A:CL0801 4.6 52.3 1.0 HD1 A:HIS680 4.8 47.1 1.0 CBB B:CLA3003 4.9 27.4 1.0 NB B:CLA3003 4.9 31.9 1.0 CMA A:CL0801 4.9 44.7 1.0 CBD A:CL0801 5.0 46.1 1.0 HMC2 B:CLA3003 5.0 49.7 1.0

Magnesium binding site 2 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:33.3 occ:1.00 MG A:CLA802 0.0 33.3 1.0 NB A:CLA802 2.0 38.4 1.0 ND A:CLA802 2.0 31.7 1.0 NC A:CLA802 2.1 32.5 1.0 NA A:CLA802 2.1 36.6 1.0 O A:HOH903 2.2 58.8 1.0 C4D A:CLA802 2.9 29.3 1.0 C1B A:CLA802 3.0 41.9 1.0 C4B A:CLA802 3.0 39.5 1.0 C4A A:CLA802 3.0 46.9 1.0 C1C A:CLA802 3.1 34.0 1.0 C4C A:CLA802 3.1 29.7 1.0 C1A A:CLA802 3.1 37.3 1.0 C1D A:CLA802 3.2 34.0 1.0 HBB2 B:CLA3004 3.2 54.1 1.0 CBB B:CLA3004 3.3 39.2 1.0 CHB A:CLA802 3.4 56.8 1.0 CHC A:CLA802 3.4 34.1 1.0 CHA A:CLA802 3.4 39.2 1.0 HBB1 B:CLA3004 3.5 54.1 1.0 CHD A:CLA802 3.5 28.7 1.0 H69 A:CL0801 3.8 71.5 1.0 HD21 A:ASN604 3.9 60.7 1.0 CAB B:CLA3004 3.9 40.7 1.0 HB1 B:ALA664 4.0 52.2 1.0 C2B A:CLA802 4.2 32.9 1.0 C3B A:CLA802 4.2 41.6 1.0 C3D A:CLA802 4.2 32.6 1.0 OD1 A:ASN604 4.3 50.8 1.0 HAB B:CLA3004 4.3 55.9 1.0 C2C A:CLA802 4.3 31.1 1.0 C2D A:CLA802 4.4 37.4 1.0 C3C A:CLA802 4.4 29.7 1.0 C3A A:CLA802 4.4 37.2 1.0 C2A A:CLA802 4.5 32.1 1.0 HHB A:CLA802 4.5 75.1 1.0 HB3 B:ALA664 4.5 52.2 1.0 HHC A:CLA802 4.5 48.0 1.0 HMA3 A:CLA802 4.5 48.8 1.0 ND2 A:ASN604 4.5 44.8 1.0 CB B:ALA664 4.6 37.6 1.0 HHD A:CLA802 4.6 41.4 1.0 H38 A:CL0801 4.7 41.4 1.0 C20 A:CL0801 4.7 53.8 1.0 C3B B:CLA3004 4.7 41.3 1.0 HB2 B:ALA664 4.7 52.2 1.0 CG A:ASN604 4.8 45.5 1.0 H68 A:CL0801 4.8 71.5 1.0 HHC B:CLA3004 4.8 47.4 1.0 CBD A:CLA802 4.9 45.9 1.0

Magnesium binding site 3 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:71.2 occ:1.00 MG A:CLA803 0.0 71.2 1.0 NB A:CLA803 2.0 61.3 1.0 ND A:CLA803 2.0 52.6 1.0 NA A:CLA803 2.1 64.9 1.0 NC A:CLA803 2.1 70.8 1.0 SD A:MET688 2.4 39.2 1.0 HE1 B:TRP588 2.6 65.3 1.0 C4D A:CLA803 2.9 59.2 1.0 C1B A:CLA803 3.0 68.1 1.0 C4A A:CLA803 3.0 70.4 1.0 C1C A:CLA803 3.1 65.4 1.0 C4B A:CLA803 3.1 66.5 1.0 C1A A:CLA803 3.1 56.4 1.0 C4C A:CLA803 3.1 62.2 1.0 C1D A:CLA803 3.2 55.1 1.0 NE1 B:TRP588 3.4 48.6 1.0 CHB A:CLA803 3.4 76.4 1.0 CHC A:CLA803 3.4 67.4 1.0 HZ2 B:TRP588 3.5 77.4 1.0 CHA A:CLA803 3.5 58.6 1.0 CHD A:CLA803 3.5 58.2 1.0 CG A:MET688 3.6 46.6 1.0 HG3 A:MET688 3.6 63.0 1.0 HB2 A:MET688 3.6 83.0 1.0 CE A:MET688 3.9 39.7 1.0 HE1 A:MET688 4.0 54.7 1.0 CZ2 B:TRP588 4.1 58.6 1.0 CE2 B:TRP588 4.1 53.0 1.0 CB A:MET688 4.2 63.3 1.0 HMC2 A:CLA856 4.2 65.0 1.0 C3D A:CLA803 4.3 59.7 1.0 HAB A:CLA856 4.3 78.8 1.0 HE2 A:MET688 4.3 54.7 1.0 C2B A:CLA803 4.3 62.5 1.0 C3B A:CLA803 4.3 63.2 1.0 C2C A:CLA803 4.3 60.3 1.0 HH2 A:TRP697 4.3 82.4 1.0 C3C A:CLA803 4.4 62.8 1.0 C2D A:CLA803 4.4 53.9 1.0 C3A A:CLA803 4.4 56.9 1.0 HG2 A:MET688 4.4 63.0 1.0 C2A A:CLA803 4.4 57.5 1.0 CD1 B:TRP588 4.5 57.7 1.0 HHB A:CLA803 4.5 98.7 1.0 HHC A:CLA803 4.5 87.9 1.0 HE3 A:MET688 4.6 54.7 1.0 HAA1 A:CLA803 4.6 74.2 1.0 HHD A:CLA803 4.6 76.9 1.0 HD1 B:TRP588 4.7 76.3 1.0 HMA3 A:CLA803 4.8 64.6 1.0 HB3 A:MET688 4.8 83.0 1.0 HA A:MET688 4.9 71.2 1.0 CBD A:CLA803 4.9 61.8 1.0 CAA A:CLA803 5.0 56.0 1.0 HAA2 A:CLA803 5.0 74.2 1.0

Magnesium binding site 4 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:76.3 occ:1.00 MG A:CLA804 0.0 76.3 1.0 NB A:CLA804 2.0 74.7 1.0 ND A:CLA804 2.0 80.3 1.0 NE2 A:HIS52 2.1 85.2 1.0 NC A:CLA804 2.1 64.2 1.0 NA A:CLA804 2.1 69.9 1.0 C4D A:CLA804 2.9 78.9 1.0 CE1 A:HIS52 2.9 79.0 1.0 C1B A:CLA804 3.0 71.7 1.0 C4A A:CLA804 3.0 65.6 1.0 HE1 A:HIS52 3.1 101.9 1.0 C1C A:CLA804 3.1 73.8 1.0 C4B A:CLA804 3.1 77.2 1.0 C4C A:CLA804 3.1 71.9 1.0 CD2 A:HIS52 3.1 85.3 1.0 C1D A:CLA804 3.1 77.2 1.0 C1A A:CLA804 3.2 79.2 1.0 HB3 J:PRO12 3.2 101.7 1.0 CHB A:CLA804 3.4 63.1 1.0 HD2 A:HIS52 3.4 109.4 1.0 HG3 J:PRO12 3.4 112.2 1.0 CHC A:CLA804 3.4 80.5 1.0 CHA A:CLA804 3.5 79.2 1.0 CHD A:CLA804 3.5 72.5 1.0 H391 J:BCR104 3.5 101.1 1.0 CB J:PRO12 4.0 78.9 1.0 ND1 A:HIS52 4.1 82.6 1.0 HB2 J:PRO12 4.1 101.7 1.0 CG J:PRO12 4.1 87.7 1.0 CG A:HIS52 4.2 86.3 1.0 C3D A:CLA804 4.3 63.9 1.0 C2B A:CLA804 4.3 74.8 1.0 C2C A:CLA804 4.3 76.0 1.0 C3B A:CLA804 4.3 71.7 1.0 C2D A:CLA804 4.4 80.5 1.0 C3C A:CLA804 4.4 81.8 1.0 C3A A:CLA804 4.4 77.8 1.0 H393 J:BCR104 4.4 101.1 1.0 HMD2 A:CLA805 4.5 107.4 1.0 C2A A:CLA804 4.5 81.1 1.0 C39 J:BCR104 4.5 78.4 1.0 H291 J:BCR104 4.5 109.9 1.0 HHB A:CLA804 4.5 82.7 1.0 HHC A:CLA804 4.5 103.6 1.0 HHD A:CLA804 4.6 94.0 1.0 HAC1 A:CLA805 4.6 111.7 1.0 HD3 J:PRO12 4.7 116.7 1.0 HG2 J:PRO12 4.8 112.2 1.0 HD1 A:HIS52 4.9 106.2 1.0 CBD A:CLA804 4.9 75.6 1.0 H392 J:BCR104 5.0 101.1 1.0 H3A A:CLA804 5.0 100.4 1.0

Magnesium binding site 5 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:88.7 occ:1.00 MG A:CLA805 0.0 88.7 1.0 NB A:CLA805 2.0 81.7 1.0 ND A:CLA805 2.0 82.6 1.0 NE2 A:HIS56 2.0 84.6 1.0 NA A:CLA805 2.1 84.8 1.0 NC A:CLA805 2.1 83.5 1.0 CE1 A:HIS56 2.8 81.1 1.0 HE1 A:HIS56 2.8 104.3 1.0 C4D A:CLA805 2.9 82.5 1.0 C1B A:CLA805 3.0 84.1 1.0 C4A A:CLA805 3.1 87.6 1.0 C4B A:CLA805 3.1 81.6 1.0 C1C A:CLA805 3.1 86.3 1.0 C4C A:CLA805 3.1 81.8 1.0 C1D A:CLA805 3.2 82.8 1.0 H102 A:CLA812 3.2 118.3 1.0 C1A A:CLA805 3.2 86.1 1.0 CD2 A:HIS56 3.2 87.1 1.0 CHB A:CLA805 3.4 88.2 1.0 CHC A:CLA805 3.5 85.9 1.0 CHA A:CLA805 3.5 84.4 1.0 H71 A:CLA812 3.5 109.4 1.0 CHD A:CLA805 3.5 82.2 1.0 HD2 A:HIS56 3.6 111.5 1.0 H93 A:CLA812 3.6 105.2 1.0 ND1 A:HIS56 4.0 77.4 1.0 C10 A:CLA812 4.1 92.7 1.0 HBB2 A:CLA806 4.2 107.5 1.0 CG A:HIS56 4.2 85.6 1.0 C3D A:CLA805 4.3 84.4 1.0 C2B A:CLA805 4.3 80.6 1.0 C3B A:CLA805 4.3 81.6 1.0 H101 A:CLA812 4.3 118.3 1.0 C2C A:CLA805 4.4 82.8 1.0 C2D A:CLA805 4.4 85.1 1.0 C3C A:CLA805 4.4 85.8 1.0 C3A A:CLA805 4.4 92.0 1.0 C2A A:CLA805 4.5 95.2 1.0 C7 A:CLA812 4.5 85.3 1.0 HHB A:CLA805 4.5 112.9 1.0 C9 A:CLA812 4.5 81.8 1.0 HHC A:CLA805 4.6 110.1 1.0 HBA2 A:CLA805 4.6 124.6 1.0 HBB2 A:CLA804 4.6 101.1 1.0 C8 A:CLA812 4.6 90.5 1.0 HB1 A:ALA55 4.6 92.1 1.0 HHD A:CLA805 4.6 105.6 1.0 HD1 A:HIS56 4.7 99.9 1.0 H51 A:CLA812 4.8 116.7 1.0 H91 A:CLA812 4.8 105.2 1.0 HMA3 A:CLA805 4.9 123.7 1.0 CBD A:CLA805 5.0 86.0 1.0 H121 A:CLA812 5.0 117.3 1.0

Magnesium binding site 6 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:68.7 occ:1.00 MG A:CLA806 0.0 68.7 1.0 NB A:CLA806 2.0 72.2 1.0 ND A:CLA806 2.0 69.2 1.0 NE2 A:HIS76 2.0 91.2 1.0 NA A:CLA806 2.1 67.9 1.0 NC A:CLA806 2.1 72.5 1.0 HMB1 A:CLA831 2.6 108.6 1.0 HMB2 A:CLA831 2.8 108.6 1.0 C4D A:CLA806 2.9 76.4 1.0 CE1 A:HIS76 3.0 96.3 1.0 CD2 A:HIS76 3.0 90.5 1.0 C1B A:CLA806 3.0 75.7 1.0 C4A A:CLA806 3.0 79.3 1.0 C4B A:CLA806 3.1 69.4 1.0 C1C A:CLA806 3.1 75.7 1.0 CMB A:CLA831 3.1 84.7 1.0 C4C A:CLA806 3.1 72.4 1.0 C1A A:CLA806 3.1 80.4 1.0 C1D A:CLA806 3.2 70.2 1.0 HD2 A:HIS76 3.2 115.6 1.0 HE1 A:HIS76 3.2 122.6 1.0 HMB3 A:CLA831 3.3 108.6 1.0 HBB1 A:CLA831 3.4 109.3 1.0 CHB A:CLA806 3.4 79.6 1.0 CHC A:CLA806 3.4 74.7 1.0 CHA A:CLA806 3.5 81.6 1.0 CHD A:CLA806 3.5 72.3 1.0 HG23 A:ILE72 3.9 114.2 1.0 ND1 A:HIS76 4.1 97.6 1.0 CG A:HIS76 4.1 91.7 1.0 HG22 A:ILE72 4.2 114.2 1.0 C3D A:CLA806 4.3 77.8 1.0 C2B A:CLA806 4.3 77.0 1.0 C3B A:CLA806 4.3 74.7 1.0 CBB A:CLA831 4.3 85.2 1.0 C2C A:CLA806 4.4 71.6 1.0 C3C A:CLA806 4.4 68.0 1.0 C2D A:CLA806 4.4 72.5 1.0 CG2 A:ILE72 4.4 89.3 1.0 C3A A:CLA806 4.4 84.5 1.0 C2A A:CLA806 4.4 85.2 1.0 C2B A:CLA831 4.5 80.8 1.0 HG21 A:ILE72 4.5 114.2 1.0 HHB A:CLA806 4.5 102.5 1.0 HHC A:CLA806 4.5 96.6 1.0 HHD A:CLA806 4.6 93.8 1.0 HD13 A:LEU356 4.7 96.0 1.0 HBB2 A:CLA831 4.8 109.3 1.0 HD1 A:HIS76 4.9 124.1 1.0 HMA3 A:CLA806 4.9 102.5 1.0 CBD A:CLA806 4.9 82.9 1.0 H3A A:CLA807 5.0 101.9 1.0

Magnesium binding site 7 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:81.0 occ:1.00 MG A:CLA807 0.0 81.0 1.0 NE2 A:HIS79 2.0 80.1 1.0 NB A:CLA807 2.0 70.5 1.0 ND A:CLA807 2.0 77.1 1.0 NC A:CLA807 2.1 79.3 1.0 NA A:CLA807 2.1 84.3 1.0 CE1 A:HIS79 2.8 80.5 1.0 HE1 A:HIS79 2.8 103.6 1.0 C4D A:CLA807 2.9 81.6 1.0 C1B A:CLA807 3.0 75.6 1.0 C4A A:CLA807 3.1 76.8 1.0 C1C A:CLA807 3.1 74.5 1.0 C4B A:CLA807 3.1 73.0 1.0 C4C A:CLA807 3.1 80.0 1.0 C1D A:CLA807 3.2 80.1 1.0 C1A A:CLA807 3.2 72.0 1.0 CD2 A:HIS79 3.2 81.3 1.0 H162 A:CLA807 3.2 93.1 1.0 CHB A:CLA807 3.4 66.5 1.0 CHC A:CLA807 3.5 71.1 1.0 CHA A:CLA807 3.5 74.6 1.0 H161 A:CLA807 3.5 93.1 1.0 HD2 A:HIS79 3.5 104.6 1.0 CHD A:CLA807 3.5 78.1 1.0 HMA1 A:CLA806 3.8 102.5 1.0 H18 A:CLA807 3.8 116.9 1.0 C16 A:CLA807 3.9 71.8 1.0 ND1 A:HIS79 4.0 81.8 1.0 H141 A:CLA807 4.0 80.2 1.0 H193 A:CLA807 4.1 111.8 1.0 CG A:HIS79 4.2 90.0 1.0 HMA2 A:CLA806 4.2 102.5 1.0 C3D A:CLA807 4.3 82.6 1.0 C2B A:CLA807 4.3 73.7 1.0 C3B A:CLA807 4.3 79.5 1.0 C2C A:CLA807 4.3 60.2 1.0 C2D A:CLA807 4.4 79.2 1.0 C3C A:CLA807 4.4 70.6 1.0 C3A A:CLA807 4.4 79.0 1.0 CMA A:CLA806 4.4 79.6 1.0 C2A A:CLA807 4.5 77.6 1.0 HBB2 A:CLA830 4.5 87.1 1.0 HHB A:CLA807 4.5 86.8 1.0 H13 A:CLA807 4.5 93.2 1.0 HHC A:CLA807 4.6 92.3 1.0 HHD A:CLA807 4.6 100.8 1.0 C18 A:CLA807 4.7 91.6 1.0 HMA3 A:CLA806 4.7 102.5 1.0 HD1 A:HIS79 4.7 105.2 1.0 C19 A:CLA807 4.8 87.3 1.0 C17 A:CLA807 4.9 83.4 1.0 C14 A:CLA807 4.9 61.0 1.0 CBD A:CLA807 4.9 80.8 1.0 C15 A:CLA807 5.0 75.0 1.0

Magnesium binding site 8 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:99.6 occ:1.00 MG A:CLA808 0.0 99.6 1.0 NB A:CLA808 2.0 91.9 1.0 ND A:CLA808 2.0 102.0 1.0 NA A:CLA808 2.1 99.1 1.0 NC A:CLA808 2.1 92.1 1.0 NE2 A:HIS93 2.2 98.8 1.0 HE1 A:HIS93 2.2 126.8 1.0 CE1 A:HIS93 2.4 99.8 1.0 C4D A:CLA808 2.9 102.5 1.0 C1B A:CLA808 3.0 88.4 1.0 C4A A:CLA808 3.1 92.8 1.0 C4B A:CLA808 3.1 92.4 1.0 C1C A:CLA808 3.1 93.2 1.0 C4C A:CLA808 3.2 94.4 1.0 C1D A:CLA808 3.2 101.6 1.0 C1A A:CLA808 3.2 99.7 1.0 CHB A:CLA808 3.4 90.3 1.0 CHC A:CLA808 3.4 96.1 1.0 CHA A:CLA808 3.5 103.0 1.0 CD2 A:HIS93 3.5 91.0 1.0 CHD A:CLA808 3.6 100.0 1.0 ND1 A:HIS93 3.8 100.7 1.0 HD2 A:HIS93 4.0 116.2 1.0 H52 A:CLA810 4.0 134.2 1.0 C3D A:CLA808 4.3 106.5 1.0 CG A:HIS93 4.3 99.1 1.0 C2B A:CLA808 4.3 83.5 1.0 C3B A:CLA808 4.3 92.4 1.0 C2C A:CLA808 4.4 93.5 1.0 C2D A:CLA808 4.4 106.1 1.0 HD1 A:HIS93 4.4 127.9 1.0 C3C A:CLA808 4.4 94.3 1.0 C3A A:CLA808 4.4 84.7 1.0 C2A A:CLA808 4.5 87.2 1.0 HHB A:CLA808 4.5 115.3 1.0 HHC A:CLA808 4.5 122.4 1.0 HHD A:CLA808 4.7 127.0 1.0 HD2 A:PHE92 4.7 132.6 1.0 H51 A:CLA810 4.8 134.2 1.0 HBA2 A:CLA808 4.9 119.9 1.0 HMA3 A:CLA808 4.9 113.6 1.0 HE2 A:PHE92 4.9 138.2 1.0 H61 A:CLA810 4.9 134.5 1.0 C5 A:CLA810 4.9 106.0 1.0 CBD A:CLA808 5.0 93.1 1.0

Magnesium binding site 9 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:54.7 occ:1.00 MG A:CLA809 0.0 54.7 1.0 NB A:CLA809 2.0 60.4 1.0 ND A:CLA809 2.0 39.4 1.0 NA A:CLA809 2.1 59.4 1.0 NC A:CLA809 2.1 39.9 1.0 OE1 A:GLN115 2.1 73.8 1.0 C4D A:CLA809 2.9 42.6 1.0 C1B A:CLA809 3.0 46.8 1.0 C4A A:CLA809 3.0 59.2 1.0 C4B A:CLA809 3.1 69.5 1.0 C1C A:CLA809 3.1 56.2 1.0 C4C A:CLA809 3.1 43.3 1.0 C1D A:CLA809 3.2 40.6 1.0 C1A A:CLA809 3.2 64.6 1.0 CD A:GLN115 3.2 71.2 1.0 H41 A:CLA829 3.3 81.8 1.0 CHB A:CLA809 3.4 51.9 1.0 CHC A:CLA809 3.4 65.4 1.0 CHA A:CLA809 3.5 57.0 1.0 CHD A:CLA809 3.5 38.5 1.0 H42 A:CLA829 3.6 81.8 1.0 NE2 A:GLN115 3.6 79.9 1.0 H52 A:CLA829 3.6 88.6 1.0 C4 A:CLA829 3.9 62.4 1.0 C3D A:CLA809 4.3 49.2 1.0 C2B A:CLA809 4.3 57.7 1.0 C3B A:CLA809 4.3 65.7 1.0 C2C A:CLA809 4.3 57.8 1.0 C2D A:CLA809 4.4 52.4 1.0 H71 A:CLA829 4.4 93.3 1.0 C3C A:CLA809 4.4 54.2 1.0 C3 A:CLA829 4.4 59.6 1.0 HMD1 A:CLA810 4.4 78.5 1.0 C3A A:CLA809 4.4 68.1 1.0 C2A A:CLA809 4.5 69.9 1.0 HE21 A:GLN115 4.5 102.8 1.0 CG A:GLN115 4.5 82.4 1.0 HHB A:CLA809 4.5 69.3 1.0 C5 A:CLA829 4.5 68.0 1.0 HHC A:CLA809 4.5 85.5 1.0 HG2 A:GLN115 4.6 105.9 1.0 HHD A:CLA809 4.6 53.2 1.0 HB2 A:GLN115 4.7 113.2 1.0 H43 A:CLA829 4.9 81.8 1.0 CBD A:CLA809 4.9 63.3 1.0 H72 A:CLA829 4.9 93.3 1.0 HAA1 A:CLA809 4.9 107.8 1.0

Magnesium binding site 10 out of 96 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:53.9 occ:1.00 MG A:CLA810 0.0 53.9 1.0 OE1 A:GLN123 2.0 73.5 1.0 NB A:CLA810 2.0 58.0 1.0 ND A:CLA810 2.0 50.8 1.0 NC A:CLA810 2.1 45.1 1.0 NA A:CLA810 2.1 78.1 1.0 C4D A:CLA810 2.9 60.9 1.0 C1B A:CLA810 3.0 66.5 1.0 C4A A:CLA810 3.0 83.6 1.0 C4B A:CLA810 3.1 61.0 1.0 C1C A:CLA810 3.1 54.7 1.0 CD A:GLN123 3.1 78.3 1.0 C1D A:CLA810 3.2 50.8 1.0 C4C A:CLA810 3.2 51.3 1.0 C1A A:CLA810 3.2 78.7 1.0 CHB A:CLA810 3.4 77.6 1.0 CHC A:CLA810 3.4 57.3 1.0 CHA A:CLA810 3.5 70.4 1.0 CHD A:CLA810 3.5 44.6 1.0 H172 A:CLA829 3.6 103.5 1.0 H171 A:CLA829 3.7 103.5 1.0 NE2 A:GLN123 3.8 81.5 1.0 H18 A:CLA829 4.1 110.7 1.0 HB2 A:GLN123 4.2 96.4 1.0 C17 A:CLA829 4.2 80.4 1.0 HB3 A:GLN123 4.2 96.4 1.0 C3D A:CLA810 4.2 62.8 1.0 C2B A:CLA810 4.3 64.8 1.0 C3B A:CLA810 4.3 64.9 1.0 CG A:GLN123 4.3 69.9 1.0 C2D A:CLA810 4.4 56.7 1.0 C2C A:CLA810 4.4 50.4 1.0 C3C A:CLA810 4.4 51.2 1.0 C3A A:CLA810 4.4 95.5 1.0 CB A:GLN123 4.5 74.5 1.0 HHB A:CLA810 4.5 100.2 1.0 C2A A:CLA810 4.5 93.4 1.0 HHC A:CLA810 4.5 75.8 1.0 H202 A:CLA829 4.6 102.5 1.0 HHD A:CLA810 4.6 60.5 1.0 HE21 A:GLN123 4.7 104.8 1.0 H152 A:CLA829 4.7 109.4 1.0 C18 A:CLA829 4.7 86.4 1.0 HG2 A:GLN123 4.7 90.8 1.0 HBB2 A:CLA809 4.8 86.8 1.0 HBA2 A:CLA810 4.9 117.2 1.0 CBD A:CLA810 4.9 81.9 1.0 HG21 A:VAL117 5.0 108.3 1.0 H3A A:CLA810 5.0 121.7 1.0

S.M.Keable, A.Kolsch, P.S.Simon, M.Dasgupta, R.Chatterjee, S.K.Subramanian, R.Hussein, M.Ibrahim, I.S.Kim, I.Bogacz, H.Makita, C.C.Pham, F.D.Fuller, S.Gul, D.Paley, L.Lassalle, K.D.Sutherlin, A.Bhowmick, N.W.Moriarty, I.D.Young, J.P.Blaschke, C.De Lichtenberg, P.Chernev, M.H.Cheah, S.Park, G.Park, J.Kim, S.J.Lee, J.Park, K.Tono, S.Owada, M.S.Hunter, A.Batyuk, R.Oggenfuss, M.Sander, S.Zerdane, D.Ozerov, K.Nass, H.Lemke, R.Mankowsky, A.S.Brewster, J.Messinger, N.K.Sauter, V.K.Yachandra, J.Yano, A.Zouni, J.Kern. Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I. Sci Rep V. 11 21787 2021.
ISSN: ESSN 2045-2322
PubMed: 34750381
DOI: 10.1038/S41598-021-00236-3