Magnesium in PDB 7mf3: Structure of the Autoinhibited State of Smooth Muscle Myosin-2
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of the Autoinhibited State of Smooth Muscle Myosin-2
(pdb code 7mf3). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Structure of the Autoinhibited State of Smooth Muscle Myosin-2, PDB code: 7mf3:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 7mf3
Go back to
Magnesium Binding Sites List in 7mf3
Magnesium binding site 1 out
of 4 in the Structure of the Autoinhibited State of Smooth Muscle Myosin-2
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of the Autoinhibited State of Smooth Muscle Myosin-2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg2003
b:106.9
occ:1.00
|
CB
|
A:SER246
|
2.1
|
100.2
|
1.0
|
O1B
|
A:ADP2001
|
2.2
|
93.5
|
1.0
|
OG
|
A:SER246
|
2.3
|
100.2
|
1.0
|
OG1
|
A:THR184
|
2.4
|
85.8
|
1.0
|
O3
|
A:PO42002
|
3.1
|
116.6
|
1.0
|
PB
|
A:ADP2001
|
3.1
|
93.5
|
1.0
|
O4
|
A:PO42002
|
3.3
|
116.6
|
1.0
|
CA
|
A:SER246
|
3.4
|
100.2
|
1.0
|
O2B
|
A:ADP2001
|
3.5
|
93.5
|
1.0
|
O3B
|
A:ADP2001
|
3.6
|
93.5
|
1.0
|
CB
|
A:THR184
|
3.6
|
85.8
|
1.0
|
N
|
A:SER246
|
3.7
|
100.2
|
1.0
|
P
|
A:PO42002
|
3.8
|
116.6
|
1.0
|
O
|
A:SER246
|
4.0
|
100.2
|
1.0
|
C
|
A:SER246
|
4.2
|
100.2
|
1.0
|
O2
|
A:PO42002
|
4.3
|
116.6
|
1.0
|
CG2
|
A:THR184
|
4.5
|
85.8
|
1.0
|
O3A
|
A:ADP2001
|
4.5
|
93.5
|
1.0
|
N
|
A:THR184
|
4.6
|
85.8
|
1.0
|
CA
|
A:THR184
|
4.7
|
85.8
|
1.0
|
CG
|
A:LYS183
|
4.8
|
93.6
|
1.0
|
O2A
|
A:ADP2001
|
4.9
|
93.5
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 7mf3
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Magnesium Binding Sites List in 7mf3
Magnesium binding site 2 out
of 4 in the Structure of the Autoinhibited State of Smooth Muscle Myosin-2
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of the Autoinhibited State of Smooth Muscle Myosin-2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg2003
b:103.0
occ:1.00
|
OG
|
B:SER246
|
2.4
|
103.9
|
1.0
|
O3B
|
B:ADP2001
|
2.6
|
125.9
|
1.0
|
CB
|
B:SER246
|
2.7
|
103.9
|
1.0
|
O2B
|
B:ADP2001
|
2.9
|
125.9
|
1.0
|
PB
|
B:ADP2001
|
3.2
|
125.9
|
1.0
|
OG1
|
B:THR184
|
3.2
|
110.7
|
1.0
|
O3
|
B:PO42002
|
3.3
|
116.5
|
1.0
|
O3A
|
B:ADP2001
|
3.7
|
125.9
|
1.0
|
CB
|
B:LYS183
|
3.9
|
101.8
|
1.0
|
CA
|
B:SER246
|
4.1
|
103.9
|
1.0
|
N
|
B:SER246
|
4.3
|
103.9
|
1.0
|
O
|
B:LYS183
|
4.5
|
101.8
|
1.0
|
C
|
B:LYS183
|
4.6
|
101.8
|
1.0
|
P
|
B:PO42002
|
4.6
|
116.5
|
1.0
|
O1B
|
B:ADP2001
|
4.6
|
125.9
|
1.0
|
C
|
B:SER245
|
4.6
|
113.8
|
1.0
|
CB
|
B:THR184
|
4.6
|
110.7
|
1.0
|
CG
|
B:LYS183
|
4.7
|
101.8
|
1.0
|
O
|
B:SER245
|
4.8
|
113.8
|
1.0
|
CA
|
B:LYS183
|
4.8
|
101.8
|
1.0
|
O2
|
B:PO42002
|
4.8
|
116.5
|
1.0
|
O
|
B:ILE466
|
4.9
|
87.2
|
1.0
|
CA
|
B:GLY180
|
4.9
|
90.2
|
1.0
|
O4
|
B:PO42002
|
4.9
|
116.5
|
1.0
|
N
|
B:THR184
|
5.0
|
110.7
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 7mf3
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Magnesium Binding Sites List in 7mf3
Magnesium binding site 3 out
of 4 in the Structure of the Autoinhibited State of Smooth Muscle Myosin-2
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of the Autoinhibited State of Smooth Muscle Myosin-2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg200
b:197.8
occ:1.00
|
OD1
|
D:ASP45
|
2.4
|
191.0
|
1.0
|
OD2
|
D:ASP52
|
2.5
|
193.4
|
1.0
|
O
|
D:PHE47
|
2.6
|
198.2
|
1.0
|
OD2
|
D:ASP49
|
2.7
|
193.0
|
1.0
|
CB
|
D:ASN43
|
2.8
|
188.1
|
1.0
|
CG
|
D:ASP45
|
3.0
|
191.0
|
1.0
|
OD1
|
D:ASP52
|
3.2
|
193.4
|
1.0
|
ND2
|
D:ASN43
|
3.2
|
188.1
|
1.0
|
CG
|
D:ASP52
|
3.2
|
193.4
|
1.0
|
CG
|
D:ASP49
|
3.3
|
193.0
|
1.0
|
OD2
|
D:ASP45
|
3.3
|
191.0
|
1.0
|
CG
|
D:ASN43
|
3.5
|
188.1
|
1.0
|
C
|
D:PHE47
|
3.7
|
198.2
|
1.0
|
OD1
|
D:ASP49
|
3.9
|
193.0
|
1.0
|
CA
|
D:ASN43
|
3.9
|
188.1
|
1.0
|
CB
|
D:ASP49
|
4.0
|
193.0
|
1.0
|
CB
|
D:ASP45
|
4.2
|
191.0
|
1.0
|
N
|
D:ASP45
|
4.2
|
191.0
|
1.0
|
N
|
D:ASN43
|
4.3
|
188.1
|
1.0
|
N
|
D:ARG44
|
4.3
|
186.3
|
1.0
|
C
|
D:ASN43
|
4.3
|
188.1
|
1.0
|
C
|
D:ILE48
|
4.4
|
195.5
|
1.0
|
O
|
D:ILE48
|
4.5
|
195.5
|
1.0
|
N
|
D:PHE47
|
4.5
|
198.2
|
1.0
|
CG
|
D:ASP41
|
4.5
|
190.9
|
1.0
|
CA
|
D:PHE47
|
4.6
|
198.2
|
1.0
|
N
|
D:ASP49
|
4.6
|
193.0
|
1.0
|
OD2
|
D:ASP41
|
4.6
|
190.9
|
1.0
|
OD1
|
D:ASP41
|
4.6
|
190.9
|
1.0
|
CA
|
D:ILE48
|
4.7
|
195.5
|
1.0
|
N
|
D:ILE48
|
4.7
|
195.5
|
1.0
|
CB
|
D:ASP52
|
4.7
|
193.4
|
1.0
|
OD1
|
D:ASN43
|
4.7
|
188.1
|
1.0
|
CA
|
D:ASP45
|
4.8
|
191.0
|
1.0
|
CB
|
D:PHE47
|
4.9
|
198.2
|
1.0
|
CA
|
D:ASP49
|
4.9
|
193.0
|
1.0
|
CB
|
D:ASP41
|
5.0
|
190.9
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 7mf3
Go back to
Magnesium Binding Sites List in 7mf3
Magnesium binding site 4 out
of 4 in the Structure of the Autoinhibited State of Smooth Muscle Myosin-2
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of the Autoinhibited State of Smooth Muscle Myosin-2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg200
b:197.2
occ:1.00
|
OD1
|
E:ASP41
|
2.1
|
207.5
|
1.0
|
OD1
|
E:ASP45
|
2.1
|
204.3
|
1.0
|
CG
|
E:ASP45
|
2.4
|
204.3
|
1.0
|
OD2
|
E:ASP45
|
2.4
|
204.3
|
1.0
|
CG
|
E:ASP41
|
2.7
|
207.5
|
1.0
|
OD1
|
E:ASN43
|
3.0
|
212.3
|
1.0
|
OD2
|
E:ASP41
|
3.3
|
207.5
|
1.0
|
CB
|
E:ASP41
|
3.5
|
207.5
|
1.0
|
CA
|
E:ASP41
|
3.5
|
207.5
|
1.0
|
O
|
E:PHE47
|
3.5
|
202.4
|
1.0
|
OD2
|
E:ASP52
|
3.6
|
208.6
|
1.0
|
CB
|
E:ASP45
|
3.7
|
204.3
|
1.0
|
CG
|
E:ASN43
|
4.0
|
212.3
|
1.0
|
N
|
E:ASP45
|
4.0
|
204.3
|
1.0
|
N
|
E:GLY46
|
4.2
|
199.6
|
1.0
|
ND2
|
E:ASN43
|
4.3
|
212.3
|
1.0
|
CG
|
E:ASP52
|
4.3
|
208.6
|
1.0
|
CA
|
E:ASP45
|
4.3
|
204.3
|
1.0
|
C
|
E:ASP41
|
4.4
|
207.5
|
1.0
|
C
|
E:PHE47
|
4.5
|
202.4
|
1.0
|
CB
|
E:ASP52
|
4.5
|
208.6
|
1.0
|
N
|
E:PHE47
|
4.6
|
202.4
|
1.0
|
N
|
E:ASP41
|
4.6
|
207.5
|
1.0
|
O
|
E:ILE40
|
4.7
|
211.2
|
1.0
|
C
|
E:ASP45
|
4.7
|
204.3
|
1.0
|
N
|
E:GLN42
|
4.8
|
195.9
|
1.0
|
N
|
E:ARG44
|
4.8
|
198.1
|
1.0
|
OD2
|
E:ASP49
|
4.9
|
218.3
|
1.0
|
|
Reference:
S.M.Heissler,
A.S.Arora,
N.Billington,
J.R.Sellers,
K.Chinthalapudi.
Cryo-Em Structure of the Autoinhibited State of Myosin-2. Sci Adv V. 7 K3273 2021.
ISSN: ESSN 2375-2548
PubMed: 34936462
DOI: 10.1126/SCIADV.ABK3273
Page generated: Thu Oct 3 00:51:18 2024
|