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Magnesium in PDB 7mhs: Structure of P97 (Subunits A to E) with Substrate Engaged

Enzymatic activity of Structure of P97 (Subunits A to E) with Substrate Engaged

All present enzymatic activity of Structure of P97 (Subunits A to E) with Substrate Engaged:
3.6.4.6;

Other elements in 7mhs:

The structure of Structure of P97 (Subunits A to E) with Substrate Engaged also contains other interesting chemical elements:

Fluorine (F) 24 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of P97 (Subunits A to E) with Substrate Engaged (pdb code 7mhs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of P97 (Subunits A to E) with Substrate Engaged, PDB code: 7mhs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7mhs

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Magnesium binding site 1 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:48.3
occ:1.00
 F1 A:BEF902 2.0 48.3 1.0
O2B A:ADP901 2.0 48.3 1.0
O3B A:ADP901 2.5 48.3 1.0
PB A:ADP901 2.6 48.3 1.0
OG1 A:THR525 2.9 53.0 1.0
BE A:BEF902 3.2 48.3 1.0
O1B A:ADP901 3.3 48.3 1.0
OD1 A:ASP577 3.9 50.5 1.0
O3A A:ADP901 4.1 48.3 1.0
CE A:LYS524 4.1 48.2 1.0
F3 A:BEF902 4.2 48.3 1.0
F2 A:BEF902 4.2 48.3 1.0
OE2 A:GLU578 4.3 47.1 1.0
CB A:THR525 4.3 53.0 1.0
NZ A:LYS524 4.4 48.2 1.0
OD2 A:ASP577 4.5 50.5 1.0
N A:THR525 4.6 53.0 1.0
CG A:ASP577 4.7 50.5 1.0
CB A:LYS524 4.8 48.2 1.0
CA A:THR525 4.9 53.0 1.0

Magnesium binding site 2 out of 8 in 7mhs

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Magnesium binding site 2 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg906

b:69.3
occ:1.00
 F1 A:BEF905 2.0 69.3 1.0
O2B A:ADP904 2.0 69.3 1.0
PB A:ADP904 2.8 69.3 1.0
OG1 A:THR252 3.0 78.7 1.0
O3B A:ADP904 3.1 69.3 1.0
BE A:BEF905 3.2 69.3 1.0
O1B A:ADP904 3.3 69.3 1.0
OE2 A:GLU305 3.8 70.5 1.0
NH2 B:ARG362 3.8 45.4 1.0
F3 A:BEF905 4.2 69.3 1.0
F2 A:BEF905 4.2 69.3 1.0
CB A:THR252 4.3 78.7 1.0
O3A A:ADP904 4.3 69.3 1.0
CG A:LYS251 4.5 73.7 1.0
CD A:LYS251 4.5 73.7 1.0
O B:ASP333 4.6 52.2 1.0
NH2 B:ARG359 4.9 52.7 1.0

Magnesium binding site 3 out of 8 in 7mhs

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Magnesium binding site 3 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:20.3
occ:1.00
 F1 B:BEF902 2.0 20.3 1.0
O2B B:ADP901 2.0 20.3 1.0
OG1 B:THR525 3.0 21.3 1.0
PB B:ADP901 3.0 20.3 1.0
BE B:BEF902 3.2 20.3 1.0
O3B B:ADP901 3.3 20.3 1.0
O1B B:ADP901 3.5 20.3 1.0
OE2 B:GLU578 3.9 23.5 1.0
F3 B:BEF902 4.0 20.3 1.0
NH2 C:ARG638 4.1 20.4 1.0
CB B:THR525 4.2 21.3 1.0
O C:ASP609 4.2 20.1 1.0
F2 B:BEF902 4.4 20.3 1.0
O3A B:ADP901 4.4 20.3 1.0
OD1 B:ASP577 4.5 24.0 1.0
OD2 B:ASP577 4.7 24.0 1.0
CE B:LYS524 4.9 20.4 1.0
NZ B:LYS524 4.9 20.4 1.0
N B:THR525 4.9 21.3 1.0

Magnesium binding site 4 out of 8 in 7mhs

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Magnesium binding site 4 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg906

b:24.9
occ:1.00
 O2B B:ADP904 2.0 24.9 1.0
F1 B:BEF905 2.0 24.9 1.0
OG1 B:THR252 2.9 26.4 1.0
PB B:ADP904 2.9 24.9 1.0
BE B:BEF905 3.2 24.9 1.0
O1B B:ADP904 3.3 24.9 1.0
O3B B:ADP904 3.4 24.9 1.0
NH2 C:ARG362 3.7 22.4 1.0
CB B:THR252 4.1 26.4 1.0
F3 B:BEF905 4.2 24.9 1.0
F2 B:BEF905 4.3 24.9 1.0
OD1 B:ASP304 4.3 33.3 1.0
O3A B:ADP904 4.4 24.9 1.0
OD2 B:ASP304 4.5 33.3 1.0
OE2 B:GLU305 4.6 31.4 1.0
CG B:ASP304 4.9 33.3 1.0
N B:THR252 4.9 26.4 1.0
CG2 B:THR252 5.0 26.4 1.0
CZ C:ARG362 5.0 22.4 1.0

Magnesium binding site 5 out of 8 in 7mhs

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Magnesium binding site 5 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:21.1
occ:1.00
 F1 C:BEF902 2.0 21.1 1.0
O2B C:ADP901 2.0 21.1 1.0
OG1 C:THR525 2.9 20.4 1.0
PB C:ADP901 3.0 21.1 1.0
BE C:BEF902 3.2 21.1 1.0
O3B C:ADP901 3.3 21.1 1.0
O1B C:ADP901 3.3 21.1 1.0
NH2 D:ARG638 3.5 20.4 1.0
O D:ASP609 3.8 21.9 1.0
F3 C:BEF902 4.1 21.1 1.0
CB C:THR525 4.1 20.4 1.0
F2 C:BEF902 4.3 21.1 1.0
O3A C:ADP901 4.4 21.1 1.0
OD1 C:ASP577 4.4 20.8 1.0
OD2 C:ASP577 4.5 20.8 1.0
OE2 C:GLU578 4.8 21.0 1.0
CZ D:ARG638 4.8 20.4 1.0
O1A C:ADP901 4.8 21.1 1.0
CG2 C:THR525 4.8 20.4 1.0
CG C:ASP577 4.9 20.8 1.0

Magnesium binding site 6 out of 8 in 7mhs

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Magnesium binding site 6 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg906

b:21.2
occ:1.00
 F1 C:BEF905 2.0 21.2 1.0
O2B C:ADP904 2.0 21.2 1.0
OG1 C:THR252 2.1 19.0 1.0
PB C:ADP904 3.1 21.2 1.0
BE C:BEF905 3.2 21.2 1.0
CB C:THR252 3.2 19.0 1.0
O3B C:ADP904 3.4 21.2 1.0
CG2 C:THR252 3.8 19.0 1.0
OD2 C:ASP304 3.9 23.8 1.0
O1B C:ADP904 3.9 21.2 1.0
F3 C:BEF905 4.0 21.2 1.0
NH2 D:ARG362 4.1 20.9 1.0
F2 C:BEF905 4.4 21.2 1.0
O3A C:ADP904 4.4 21.2 1.0
CA C:THR252 4.4 19.0 1.0
OD1 C:ASP304 4.6 23.8 1.0
N C:THR252 4.6 19.0 1.0
CG C:ASP304 4.6 23.8 1.0
O1A C:ADP904 5.0 21.2 1.0
OE2 C:GLU305 5.0 22.1 1.0

Magnesium binding site 7 out of 8 in 7mhs

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Magnesium binding site 7 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg903

b:39.6
occ:1.00
 F1 D:BEF902 2.0 39.6 1.0
O2B D:ADP901 2.0 39.6 1.0
OG1 D:THR525 2.7 35.0 1.0
PB D:ADP901 2.9 39.6 1.0
BE D:BEF902 3.2 39.6 1.0
O1B D:ADP901 3.3 39.6 1.0
O3B D:ADP901 3.3 39.6 1.0
CB D:THR525 3.9 35.0 1.0
NH2 E:ARG638 4.1 45.7 1.0
F2 D:BEF902 4.1 39.6 1.0
OE2 D:GLU578 4.2 28.9 1.0
F3 D:BEF902 4.3 39.6 1.0
OD1 D:ASP577 4.3 29.1 1.0
O E:ASP609 4.4 45.6 1.0
O3A D:ADP901 4.4 39.6 1.0
NZ D:LYS524 4.5 30.6 1.0
N D:THR525 4.6 35.0 1.0
CE D:LYS524 4.7 30.6 1.0
OD2 D:ASP577 4.8 29.1 1.0
CA D:THR525 4.8 35.0 1.0
CG2 D:THR525 4.9 35.0 1.0

Magnesium binding site 8 out of 8 in 7mhs

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Magnesium binding site 8 out of 8 in the Structure of P97 (Subunits A to E) with Substrate Engaged


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of P97 (Subunits A to E) with Substrate Engaged within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg906

b:30.6
occ:1.00
 F1 D:BEF905 2.0 30.6 1.0
O2B D:ADP904 2.0 30.6 1.0
PB D:ADP904 2.9 30.6 1.0
OG1 D:THR252 3.0 25.4 1.0
BE D:BEF905 3.2 30.6 1.0
O1B D:ADP904 3.3 30.6 1.0
O3B D:ADP904 3.4 30.6 1.0
OE2 D:GLU305 3.9 31.4 1.0
NH2 E:ARG362 3.9 51.5 1.0
OD2 D:ASP304 3.9 30.0 1.0
F3 D:BEF905 4.1 30.6 1.0
CB D:THR252 4.2 25.4 1.0
F2 D:BEF905 4.3 30.6 1.0
OD1 D:ASP304 4.4 30.0 1.0
O3A D:ADP904 4.4 30.6 1.0
CG D:ASP304 4.6 30.0 1.0
O E:ASP333 4.8 56.6 1.0
CG2 D:THR252 5.0 25.4 1.0

Reference:

Y.Xu, H.Han, I.Cooney, Y.Guo, N.G.Moran, N.R.Zuniga, J.C.Price, C.P.Hill, P.S.Shen. Active Conformation of the P97-P47 Unfoldase Complex. Nat Commun V. 13 2640 2022.
ISSN: ESSN 2041-1723
PubMed: 35552390
DOI: 10.1038/S41467-022-30318-3
Page generated: Thu Oct 3 00:55:28 2024

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