Magnesium in PDB 7mi6: Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1

The structure of Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1 also contains other interesting chemical elements:

Bromine	(Br)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1 (pdb code 7mi6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1, PDB code: 7mi6:

Magnesium binding site 1 out of 1 in the Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Dynein Motor Domain in the Presence of A Pyrazolo-Pyrimidinone- Based Compound, Model 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4204 b:141.5 occ:1.00 O3G A:ATP4203 2.0 154.5 1.0 O1B A:ATP4203 2.0 154.5 1.0 OG1 A:THR2081 2.1 164.6 1.0 OE2 A:GLU2195 2.4 175.4 1.0 PG A:ATP4203 3.3 154.5 1.0 CB A:THR2081 3.3 164.6 1.0 PB A:ATP4203 3.3 154.5 1.0 CD A:GLU2195 3.5 175.4 1.0 O3B A:ATP4203 3.7 154.5 1.0 NH2 A:ARG2549 3.9 135.9 1.0 O2G A:ATP4203 3.9 154.5 1.0 OE2 A:GLU2511 4.0 120.9 1.0 OE1 A:GLU2195 4.0 175.4 1.0 N A:THR2081 4.1 164.6 1.0 O3A A:ATP4203 4.2 154.5 1.0 CG2 A:THR2081 4.2 164.6 1.0 CG A:LYS2080 4.3 160.3 1.0 CA A:THR2081 4.3 164.6 1.0 O2A A:ATP4203 4.5 154.5 1.0 O1G A:ATP4203 4.5 154.5 1.0 O2B A:ATP4203 4.5 154.5 1.0 CG A:GLU2195 4.7 175.4 1.0 PA A:ATP4203 4.9 154.5 1.0

C.C.Santarossa, K.J.Mickolajczyk, J.B.Steinman, L.Urnavicius, N.Chen, Y.Hirata, Y.Fukase, N.Coudray, D.C.Ekiert, G.Bhabha, T.M.Kapoor. Targeting Allostery in the Dynein Motor Domain with Small Molecule Inhibitors Cell Chem Biol 2021.
ISSN: ESSN 2451-9456
DOI: 10.1016/J.CHEMBIOL.2021.04.024