Magnesium in PDB 7mo3: Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom

Protein crystallography data

The structure of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom, PDB code: 7mo3 was solved by C.J.Bley, S.Nie, G.W.Mobbs, S.Petrovic, A.T.Gres, X.Liu, S.Mukherjee, S.Harvey, F.M.Huber, D.H.Lin, B.Brown, A.W.Tang, E.J.Rundlet, A.R.Correia, S.Chen, S.G.Regmi, T.A.Stevens, C.A.Jette, M.Dasso, A.Patke, A.F.Palazzo, A.A.Kossiakoff, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.39 / 2.05
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.97, 62.55, 70.65, 90, 105.12, 90
R / Rfree (%) 20.4 / 22.8

Other elements in 7mo3:

The structure of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom (pdb code 7mo3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom, PDB code: 7mo3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7mo3

Go back to Magnesium Binding Sites List in 7mo3
Magnesium binding site 1 out of 2 in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:47.2
occ:1.00
O A:HOH412 2.0 47.3 1.0
O A:HOH423 2.0 51.1 1.0
O2B A:GDP301 2.1 43.7 1.0
OG1 A:THR24 2.1 49.7 1.0
O A:HOH413 2.1 48.7 1.0
O A:HOH409 2.1 50.0 1.0
CB A:THR24 3.2 52.0 1.0
HB A:THR24 3.2 62.4 1.0
PB A:GDP301 3.4 50.2 1.0
H A:THR24 3.4 55.2 1.0
O1B A:GDP301 3.5 49.2 1.0
N A:THR24 4.0 46.0 1.0
O A:THR66 4.1 51.7 1.0
HB2 A:LYS23 4.1 59.7 1.0
O A:HOH446 4.1 69.0 1.0
O1A A:GDP301 4.1 47.7 1.0
HG21 A:THR24 4.1 63.4 1.0
CA A:THR24 4.2 51.2 1.0
OD2 A:ASP65 4.2 51.6 1.0
OD1 A:ASP65 4.3 50.2 1.0
OG1 A:THR66 4.3 56.7 1.0
CG2 A:THR24 4.3 52.8 1.0
O3B A:GDP301 4.3 51.4 1.0
OE2 A:GLU70 4.4 55.6 1.0
HE2 A:LYS23 4.4 62.6 1.0
H A:GLY68 4.4 70.6 1.0
HA A:THR24 4.4 61.5 1.0
O3A A:GDP301 4.5 46.7 1.0
HA2 A:GLY68 4.5 73.4 1.0
HG1 A:THR66 4.5 68.1 1.0
HZ3 A:LYS23 4.6 62.0 1.0
HZ1 A:LYS23 4.6 62.0 1.0
CG A:ASP65 4.6 52.5 1.0
PA A:GDP301 4.7 49.5 1.0
O2A A:GDP301 4.8 50.3 1.0
N A:GLY68 4.8 58.8 1.0
HG23 A:THR24 4.8 63.4 1.0
O A:HOH402 4.9 49.0 1.0
C A:THR66 4.9 55.5 1.0
NZ A:LYS23 4.9 51.7 1.0
HA A:ALA67 5.0 71.8 1.0
HG22 A:THR24 5.0 63.4 1.0

Magnesium binding site 2 out of 2 in 7mo3

Go back to Magnesium Binding Sites List in 7mo3
Magnesium binding site 2 out of 2 in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.05 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg302

b:75.4
occ:1.00
O C:HOH402 2.0 72.2 1.0
O1B C:GDP301 2.1 69.6 1.0
OG1 C:THR24 2.1 68.9 1.0
O C:HOH405 2.1 86.8 1.0
O C:HOH403 2.2 77.0 1.0
O C:HOH406 2.2 83.9 1.0
CB C:THR24 3.2 71.2 1.0
HB C:THR24 3.2 85.5 1.0
PB C:GDP301 3.3 70.2 1.0
O2B C:GDP301 3.4 79.2 1.0
H C:THR24 3.4 81.5 1.0
O2A C:GDP301 3.9 71.0 1.0
N C:THR24 4.0 67.9 1.0
O C:THR66 4.0 97.3 1.0
HG21 C:THR24 4.0 84.5 1.0
OD2 C:ASP65 4.1 84.0 1.0
HB2 C:LYS23 4.1 86.1 1.0
OD1 C:ASP65 4.2 79.6 1.0
CA C:THR24 4.2 68.2 1.0
OG1 C:THR66 4.2 100.1 1.0
CG2 C:THR24 4.2 70.4 1.0
O3B C:GDP301 4.3 72.6 1.0
OE2 C:GLU70 4.4 104.0 1.0
HE2 C:LYS23 4.4 96.8 1.0
O3A C:GDP301 4.4 63.6 1.0
H C:GLY68 4.4 135.9 1.0
HA C:THR24 4.5 81.9 1.0
HG1 C:THR66 4.5 120.1 1.0
PA C:GDP301 4.5 68.8 1.0
O1A C:GDP301 4.5 71.0 1.0
HA2 C:GLY68 4.5 131.7 1.0
CG C:ASP65 4.6 84.6 1.0
HZ3 C:LYS23 4.7 100.2 1.0
HG23 C:THR24 4.7 84.5 1.0
N C:GLY68 4.8 113.2 1.0
C C:THR66 4.8 99.9 1.0
HG22 C:THR24 5.0 84.5 1.0

Reference:

C.J.Bley, S.Nie, G.W.Mobbs, S.Petrovic, A.T.Gres, X.Liu, S.Mukherjee, S.Harvey, F.M.Huber, D.H.Lin, B.Brown, A.W.Tang, E.J.Rundlet, A.R.Correia, S.Chen, S.G.Regmi, T.A.Stevens, C.A.Jette, M.Dasso, A.Patke, A.F.Palazzo, A.A.Kossiakoff, A.Hoelz. Architecture of the Cytoplasmic Face of the Nuclear Pore. Science V. 376 M9129 2022.
ISSN: ESSN 1095-9203
PubMed: 35679405
DOI: 10.1126/SCIENCE.ABM9129
Page generated: Thu Oct 3 01:04:15 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy