Magnesium in PDB 7mrl: Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3

The structure of Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3, PDB code: 7mrl was solved by C.Bou-Nader, J.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.11 / 3.15
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	96.717, 108.846, 146.021, 90, 90, 90
R / Rfree (%)	18.5 / 22.3

The binding sites of Magnesium atom in the Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3 (pdb code 7mrl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3, PDB code: 7mrl:

Magnesium binding site 1 out of 1 in the Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hiv-1 Matrix Domain Bound to Human TRNALYS3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:80.4 occ:1.00 OP2 A:U12 2.4 95.9 1.0 OP2 A:U8 3.6 98.9 1.0 OP2 A:A9 3.8 97.9 1.0 OP1 A:U8 3.8 96.0 1.0 H3' A:C11 3.8 107.4 1.0 P A:U12 3.9 99.1 1.0 OP2 A:C11 4.0 104.2 1.0 P A:U8 4.2 97.3 1.0 OP1 A:A9 4.2 93.0 1.0 O5' A:C11 4.3 105.2 1.0 H5 A:U12 4.4 111.0 1.0 P A:C11 4.5 102.5 1.0 P A:A9 4.5 98.9 1.0 O3' A:C11 4.6 88.9 1.0 C3' A:C11 4.6 89.5 1.0 OP1 A:C11 4.7 88.3 1.0 OP1 A:U12 4.8 98.2 1.0 O5' A:U12 4.8 96.0 1.0

C.Bou-Nader, F.Muecksch, B.J.Brown, M.J.Gordon, A.York, C.Peng, R.Ghirlando, F.M.Summers, D.P.Bieniasz, J.Zhang. Hiv-1 Matrix-Trna Complex Structure Reveals Basis For Host Control of Gag Localization Cell Host Microbe V. 29 2021.
ISSN: ESSN 1934-6069
DOI: 10.1016/J.CHOM.2021.07.006