Magnesium in PDB 7myc: Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene

Enzymatic activity of Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene

All present enzymatic activity of Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene:
1.2.1.88; 1.5.5.2;

Protein crystallography data

The structure of Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene, PDB code: 7myc was solved by J.J.Tanner, A.C.Campbell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.65 / 1.90
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	100.932, 101.496, 125.741, 90, 106.54, 90
*R / R_free (%)*	17.6 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene (pdb code 7myc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene, PDB code: 7myc:

Magnesium binding site 1 out of 1 in 7myc

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Magnesium Binding Sites List in 7myc

Magnesium binding site 1 out of 1 in the Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Proline Utilization A with the Fad Covalently Modified By Tetrahydrothiophene within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg1303 b:28.3 occ:1.00	O2A	B:NAI1304	1.9	30.3	1.0
	O1N	B:NAI1304	1.9	33.8	1.0
	O	B:HOH1672	2.0	28.4	1.0
	O	B:HOH1682	2.0	33.5	1.0
	O	B:HOH1976	2.2	29.7	1.0
	O	B:HOH1999	2.3	26.8	1.0
	PN	B:NAI1304	3.1	27.7	1.0
	PA	B:NAI1304	3.2	26.2	1.0
	O3	B:NAI1304	3.7	29.8	1.0
	O5B	B:NAI1304	3.9	24.1	1.0
	O	B:HOH1552	4.1	35.9	1.0
	O2N	B:NAI1304	4.2	27.0	1.0
	C8A	B:NAI1304	4.3	22.6	1.0
	C5D	B:NAI1304	4.4	29.7	1.0
	O5D	B:NAI1304	4.5	31.2	1.0
	O1A	B:NAI1304	4.5	19.7	1.0
	O	B:HOH1636	4.5	27.0	1.0
	CG2	B:VAL786	4.8	14.7	1.0
	N7A	B:NAI1304	4.8	22.6	1.0

Reference:

A.C.Campbell, A.R.Prater, A.N.Bogner, T.P.Quinn, K.S.Gates, D.F.Becker, J.J.Tanner. Photoinduced Covalent Irreversible Inactivation of Proline Dehydrogenase By S-Heterocycles. Acs Chem.Biol. 2021.
ISSN: ESSN 1554-8937
PubMed: 34542291
DOI: 10.1021/ACSCHEMBIO.1C00427

Page generated: Thu Oct 3 01:11:04 2024

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