Magnesium in PDB 7n72: Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State

The structure of Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Fluorine	(F)	4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State (pdb code 7n72). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State, PDB code: 7n72:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:42.5 occ:1.00 F2 A:ALF1201 2.0 42.4 1.0 OD2 A:ASP508 2.1 39.9 1.0 O A:THR510 2.2 40.3 1.0 OD1 A:ASP873 2.3 42.9 1.0 CG A:ASP508 3.2 39.9 1.0 CG A:ASP873 3.3 42.9 1.0 C A:THR510 3.3 40.3 1.0 AL A:ALF1201 3.6 42.4 1.0 OD1 A:ASP508 3.6 39.9 1.0 OD2 A:ASP873 3.7 42.9 1.0 F3 A:ALF1201 3.8 42.4 1.0 CA A:THR510 4.2 40.3 1.0 CB A:THR510 4.2 40.3 1.0 OD2 A:ASP877 4.2 44.0 1.0 N A:GLY511 4.3 41.8 1.0 O A:GLY342 4.3 40.7 1.0 N A:THR510 4.3 40.3 1.0 F4 A:ALF1201 4.4 42.4 1.0 N A:GLY874 4.4 44.2 1.0 CB A:ASP508 4.5 39.9 1.0 CA A:GLY511 4.5 41.8 1.0 OG1 A:THR512 4.5 39.7 1.0 C A:ASP873 4.6 42.9 1.0 N A:ASP873 4.6 42.9 1.0 CB A:ASP873 4.6 42.9 1.0 CA A:GLY874 4.7 44.2 1.0 CA A:GLY342 4.7 40.7 1.0 CA A:ASP873 4.8 42.9 1.0 N A:THR512 4.9 39.7 1.0 C A:GLY511 4.9 41.8 1.0 CG2 A:THR510 5.0 40.3 1.0 C A:GLY342 5.0 40.7 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017