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Magnesium in PDB 7n72: Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State

Other elements in 7n72:

The structure of Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Fluorine (F) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State (pdb code 7n72). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State, PDB code: 7n72:

Magnesium binding site 1 out of 1 in 7n72

Go back to Magnesium Binding Sites List in 7n72
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the Alf-Bound E2-Pi-Like State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1202

b:42.5
occ:1.00
F2 A:ALF1201 2.0 42.4 1.0
OD2 A:ASP508 2.1 39.9 1.0
O A:THR510 2.2 40.3 1.0
OD1 A:ASP873 2.3 42.9 1.0
CG A:ASP508 3.2 39.9 1.0
CG A:ASP873 3.3 42.9 1.0
C A:THR510 3.3 40.3 1.0
AL A:ALF1201 3.6 42.4 1.0
OD1 A:ASP508 3.6 39.9 1.0
OD2 A:ASP873 3.7 42.9 1.0
F3 A:ALF1201 3.8 42.4 1.0
CA A:THR510 4.2 40.3 1.0
CB A:THR510 4.2 40.3 1.0
OD2 A:ASP877 4.2 44.0 1.0
N A:GLY511 4.3 41.8 1.0
O A:GLY342 4.3 40.7 1.0
N A:THR510 4.3 40.3 1.0
F4 A:ALF1201 4.4 42.4 1.0
N A:GLY874 4.4 44.2 1.0
CB A:ASP508 4.5 39.9 1.0
CA A:GLY511 4.5 41.8 1.0
OG1 A:THR512 4.5 39.7 1.0
C A:ASP873 4.6 42.9 1.0
N A:ASP873 4.6 42.9 1.0
CB A:ASP873 4.6 42.9 1.0
CA A:GLY874 4.7 44.2 1.0
CA A:GLY342 4.7 40.7 1.0
CA A:ASP873 4.8 42.9 1.0
N A:THR512 4.9 39.7 1.0
C A:GLY511 4.9 41.8 1.0
CG2 A:THR510 5.0 40.3 1.0
C A:GLY342 5.0 40.7 1.0

Reference:

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017
Page generated: Thu Oct 3 01:15:02 2024

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