Magnesium in PDB 7n73: Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State

The structure of Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Fluorine	(F)	4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State (pdb code 7n73). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State, PDB code: 7n73:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1203 b:65.5 occ:1.00 O A:THR510 1.9 56.9 1.0 F2 A:ALF1202 2.2 64.6 1.0 OD2 A:ASP508 2.3 58.0 1.0 OD1 A:ASP873 2.8 69.2 1.0 C A:THR510 3.0 56.9 1.0 CG A:ASP508 3.5 58.0 1.0 CG A:ASP873 3.9 69.2 1.0 AL A:ALF1202 3.9 64.6 1.0 CA A:THR510 3.9 56.9 1.0 N A:GLY511 3.9 59.9 1.0 CB A:THR510 4.0 56.9 1.0 OD1 A:ASP508 4.1 58.0 1.0 CA A:GLY511 4.1 59.9 1.0 F4 A:ALF1202 4.2 64.6 1.0 N A:THR510 4.2 56.9 1.0 OD2 A:ASP873 4.2 69.2 1.0 N A:GLY874 4.3 74.2 1.0 F3 A:ALF1202 4.4 64.6 1.0 CG2 A:THR510 4.4 56.9 1.0 O1B A:ADP1201 4.6 57.2 1.0 C A:GLY511 4.6 59.9 1.0 CB A:ASP508 4.6 58.0 1.0 CA A:GLY874 4.6 74.2 1.0 N A:THR512 4.7 57.4 1.0 OG1 A:THR512 4.7 57.4 1.0 OD2 A:ASP877 4.9 72.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of ATP13A2 in the Adp-Alf-Bound E1P-Adp-Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1204 b:59.8 occ:1.00 O2A A:ADP1201 2.4 57.2 1.0 O3B A:ADP1201 2.4 57.2 1.0 PA A:ADP1201 3.6 57.2 1.0 PB A:ADP1201 3.7 57.2 1.0 H8 A:ADP1201 3.8 57.2 1.0 NH2 A:ARG681 3.9 51.1 1.0 O5' A:ADP1201 4.0 57.2 1.0 O3A A:ADP1201 4.1 57.2 1.0 O1B A:ADP1201 4.1 57.2 1.0 C8 A:ADP1201 4.5 57.2 1.0 F2 A:ALF1202 4.8 64.6 1.0 N7 A:ADP1201 4.8 57.2 1.0 ND2 A:ASN876 4.8 71.0 1.0 CE2 A:PHE625 4.8 58.8 1.0 CZ A:ARG681 4.9 51.1 1.0 O2B A:ADP1201 4.9 57.2 1.0 CZ A:PHE625 4.9 58.8 1.0 O1A A:ADP1201 5.0 57.2 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017