Magnesium in PDB 7n74: Cryo-Em Structure of ATP13A2 D508N Mutant in the E1-Atp-Like State

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 D508N Mutant in the E1-Atp-Like State (pdb code 7n74). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 D508N Mutant in the E1-Atp-Like State, PDB code: 7n74:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 D508N Mutant in the E1-Atp-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 D508N Mutant in the E1-Atp-Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:27.7 occ:1.00 O2B A:ATP1201 2.2 37.6 1.0 O3G A:ATP1201 2.3 37.6 1.0 PB A:ATP1201 3.6 37.6 1.0 PG A:ATP1201 3.6 37.6 1.0 O A:ASP873 3.7 25.3 1.0 O3B A:ATP1201 4.0 37.6 1.0 ND2 A:ASN508 4.0 22.2 1.0 OD2 A:ASP873 4.2 25.3 1.0 O1A A:ATP1201 4.2 37.6 1.0 O1G A:ATP1201 4.2 37.6 1.0 ND2 A:ASN876 4.3 26.9 1.0 OD1 A:ASP877 4.3 25.2 1.0 O A:THR510 4.4 20.2 1.0 O3A A:ATP1201 4.6 37.6 1.0 CB A:ASN876 4.6 26.9 1.0 PA A:ATP1201 4.7 37.6 1.0 O1B A:ATP1201 4.7 37.6 1.0 O2A A:ATP1201 4.7 37.6 1.0 C A:ASP873 4.7 25.3 1.0 CB A:ASP873 4.8 25.3 1.0 O2G A:ATP1201 4.8 37.6 1.0 CG A:ASN876 4.9 26.9 1.0 CG A:ASP873 5.0 25.3 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017